Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 5.8e-127 457.6 237 100.0
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.7e-113 411.8 220 98.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.1e-76 289.7 199 74.9
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 4.7e-76 288.5 199 74.9
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 5.2e-75 285.0 199 74.4
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 7.0e-72 274.6 220 64.1
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.2e-71 273.9 189 74.6
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.0e-71 273.1 189 74.6
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 5.9e-71 271.6 199 69.8
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 5.9e-71 271.6 192 72.4
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 1.3e-70 270.4 189 74.1
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.2e-70 269.6 189 74.6
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 3.8e-70 268.9 199 69.3
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 3.2e-69 265.8 202 66.8
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 3.2e-69 265.8 202 66.8
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.6e-68 262.3 202 67.8
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.6e-68 262.3 202 67.8
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.6e-68 262.3 201 67.7
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.0e-67 260.8 197 69.5
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.8e-67 260.0 203 67.0
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.8e-67 260.0 203 67.0
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.8e-67 260.0 203 67.0
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 3.0e-67 259.2 203 65.5
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 6.8e-67 258.1 188 69.1
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.2e-66 257.3 204 65.7
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.0e-66 256.5 205 66.3
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.6e-66 256.1 195 65.6
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 3.4e-66 255.8 202 66.8
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 4.4e-66 255.4 197 66.5
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.4e-66 255.4 203 64.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.4e-66 255.4 202 65.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 9.7e-66 254.2 188 67.6
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.7e-65 253.4 203 64.0
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.7e-65 253.4 188 68.6
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.7e-65 253.4 203 65.0
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.2e-65 253.1 198 66.2
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.2e-65 253.1 203 64.5
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.2e-65 253.1 203 65.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.8e-65 252.7 203 66.0
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 4.8e-65 251.9 198 67.2
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 4.8e-65 251.9 201 66.2
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 8.3e-65 251.1 203 64.5
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 8.3e-65 251.1 195 65.1
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 8.3e-65 251.1 191 67.5
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.8e-64 250.0 203 63.1
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.4e-64 249.6 201 66.2
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.1e-64 249.2 188 67.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.1e-64 249.2 188 67.0
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.3e-64 248.4 202 66.3
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 7.0e-64 248.1 203 63.5
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 9.1e-64 247.7 235 57.9
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 9.1e-64 247.7 188 68.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.2e-63 247.3 203 64.0
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.7e-63 246.1 201 66.2
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.5e-63 245.4 188 67.0
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.9e-63 245.0 203 62.6
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 5.9e-63 245.0 197 65.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 5.9e-63 245.0 188 67.0
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 5.9e-63 245.0 188 67.0
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 5.9e-63 245.0 203 62.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 7.7e-63 244.6 201 65.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.3e-62 243.8 195 64.1
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.2e-62 243.0 196 62.2
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.2e-62 243.0 188 68.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.8e-62 242.3 203 61.6
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 6.5e-62 241.5 202 63.9
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.5e-62 241.1 188 66.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 8.5e-62 241.1 195 63.1
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.5e-61 240.4 175 69.7
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 3.2e-61 239.2 188 64.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 4.2e-61 238.8 188 64.4
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 7.2e-61 238.0 195 62.6
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 9.4e-61 237.7 210 60.0
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.1e-60 236.5 188 63.3
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 2.1e-60 236.5 203 61.1
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.7e-60 236.1 188 64.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.7e-60 236.1 208 59.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.7e-60 236.1 203 61.1
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 6.1e-60 235.0 197 61.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 6.1e-60 235.0 195 62.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 8.0e-60 234.6 201 60.7
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.4e-59 233.8 188 64.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 8.8e-59 231.1 199 60.8
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.5e-58 230.3 194 60.8
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-58 230.3 156 73.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 2.0e-58 229.9 198 60.6
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.6e-58 229.6 188 63.3
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 8.3e-57 224.6 166 69.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 8.3e-57 224.6 210 58.1
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.4e-56 223.8 197 58.9
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.4e-56 223.8 288 46.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 4.1e-56 222.2 198 58.6
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 4.1e-56 222.2 196 59.7
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 9.1e-56 221.1 195 59.5
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.5e-53 213.8 208 54.8
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 9.5e-53 211.1 198 55.1
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.6e-52 210.3 166 65.1
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.5e-50 203.8 188 54.3
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 9.8e-50 201.1 233 51.1
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 3.2e-48 196.1 195 54.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 9.2e-48 194.5 188 53.2
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.2e-47 194.1 184 53.8
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 5.9e-47 191.8 188 52.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 7.8e-47 191.4 188 53.2
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.0e-46 191.0 188 52.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 2.3e-46 189.9 188 53.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 5.6e-45 185.3 188 52.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.3e-45 184.9 188 52.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 8.0e-44 181.4 207 50.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 3.4e-42 176.0 188 50.5
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.9e-41 172.9 188 50.5
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.9e-40 170.2 184 54.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.4e-40 169.9 188 49.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 7.0e-40 168.3 188 48.9
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 7.0e-40 168.3 188 48.9
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 7.0e-40 168.3 188 48.9
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.7e-39 166.4 188 51.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.3e-38 163.3 188 47.9
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.0e-38 162.9 156 54.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.0e-38 162.9 156 54.5
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 8.0e-36 154.8 162 51.2
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.1e-35 152.9 106 72.6
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.1e-32 144.4 169 50.9
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.7e-31 139.8 188 44.1
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.9e-27 124.8 99 66.7
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 3.9e-22 109.4 86 66.3
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 5.1e-22 109.0 93 61.3
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.1e-21 107.8 76 61.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 9.6e-21 104.8 85 64.7
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.0e-19 99.4 79 60.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.3e-17 94.4 67 73.1
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 4.2e-16 89.4 169 35.5
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.2e-16 89.4 68 63.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 7.1e-16 88.6 73 61.6
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.2e-15 87.8 68 61.8
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.9e-14 82.8 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 5.1e-14 82.4 177 33.9
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.9e-13 80.5 173 29.5
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 5.6e-13 79.0 75 56.0
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.1e-12 75.1 99 48.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.4e-11 74.3 83 51.8
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.2e-10 71.2 175 28.0


User provided reference genes

Program Settings