Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XFK461 Arachis hypogaea HOM05D006811 ORTHO05D008419 1.9e-43 178.7 86 100.0
arahy.Tifrunner.gnm1.ann1.A3RENN Arachis hypogaea HOM05D006811 ORTHO05D008419 1.0e-33 146.4 74 94.6
arahy.Tifrunner.gnm1.ann1.JYBV0C Arachis hypogaea HOM05D006811 ORTHO05D008419 1.0e-33 146.4 74 94.6
Lj6g0026577 Lotus japonicus HOM05D006811 ORTHO05D008419 2.5e-19 98.6 75 70.7
Glyma.11G212500 Glycine max HOM05D006811 ORTHO05D008419 3.2e-19 98.2 74 68.9
Glyma.18G043800 Glycine max HOM05D006811 ORTHO05D008419 4.2e-19 97.8 74 68.9
Medtr3g064600 Medicago truncatula HOM05D006811 ORTHO05D008419 7.2e-19 97.1 74 70.3
Medtr3g073800 Medicago truncatula HOM05D006811 ORTHO05D008419 1.6e-18 95.9 74 68.9
Lalb_Chr15g0085211 Lupinus albus HOM05D006811 ORTHO05D008419 6.1e-18 94.0 75 62.7
TPR.G26689 Trifolium pratense HOM05D006811 ORTHO05D008419 1.4e-17 92.8 74 66.2
Psat5g142440 Pisum sativum HOM05D006811 ORTHO05D008419 5.2e-17 90.9 74 67.6
VMungo0540G2025 Vigna mungo HOM05D006811 ORTHO05D008419 1.3e-15 86.3 74 63.5
Haze_14327 Corylus avellana HOM05D006811 ORTHO05D008419 3.1e-14 81.6 75 57.3
Hma1.2p1_0158F.1_g069620 Hydrangea macrophylla HOM05D006811 ORTHO05D008419 1.0e-12 76.6 60 63.3
FAN26G0959 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.3e-12 76.3 78 55.1
Duzib138G1484 Durio zibethinus HOM05D006811 ORTHO05D008419 2.9e-12 75.1 83 53.0
FAN23G2849 Fragaria x ananassa HOM05D006811 ORTHO05D008419 2.9e-12 75.1 69 60.9
FAN28G1678 Fragaria x ananassa HOM05D006811 ORTHO05D008419 2.9e-12 75.1 69 60.9
FvH4_1g27290 Fragaria vesca HOM05D006811 ORTHO05D008419 3.8e-12 74.7 68 61.8
AL2G23270 Arabidopsis lyrata HOM05D006811 ORTHO05D008419 5.0e-12 74.3 76 59.2
Cpa.g.sc178.33 Carica papaya HOM05D006811 ORTHO05D008419 5.0e-12 74.3 68 54.4
QL02p064229 Quercus lobata HOM05D006811 ORTHO05D008419 6.6e-12 73.9 67 61.2
MD17G1286700 Malus domestica HOM05D006811 ORTHO05D008419 8.6e-12 73.6 74 52.7
A07p33010 Brassica napus HOM05D006811 ORTHO05D008419 1.5e-11 72.8 77 57.1
BraA07t30929Z Brassica rapa HOM05D006811 ORTHO05D008419 1.5e-11 72.8 77 57.1
Cfa007746 Carpinus fangiana HOM05D006811 ORTHO05D008419 1.5e-11 72.8 50 68.0
C06p39240 Brassica napus HOM05D006811 ORTHO05D008419 3.3e-11 71.6 76 53.9
BolC6t39018H Brassica oleracea HOM05D006811 ORTHO05D008419 3.3e-11 71.6 76 53.9
RcHm_v2.0_Chr3g0488721 Rosa chinensis HOM05D006811 ORTHO05D008419 4.2e-11 71.2 67 55.2
AT1G65900 Arabidopsis thaliana HOM05D006811 ORTHO05D008419 5.5e-11 70.9 77 55.8
Lj4A251G58 Lonicera japonica HOM05D006811 ORTHO05D008419 5.5e-11 70.9 69 59.4
ClCG10G010680 Citrullus lanatus HOM05D006811 ORTHO05D008419 7.2e-11 70.5 77 51.9
Thhalv10018647m.g Eutrema salsugineum HOM05D006811 ORTHO05D008419 7.2e-11 70.5 76 55.3
Dinv28246 Davidia involucrata HOM05D006811 ORTHO05D008419 1.2e-10 69.7 78 51.3
Hund22201 Selenicereus undatus HOM05D006811 ORTHO05D008419 1.2e-10 69.7 63 57.1
Carub.0002s1184 Capsella rubella HOM05D006811 ORTHO05D008419 1.6e-10 69.3 76 51.3
THA.LOC104825578 Tarenaya hassleriana HOM05D006811 ORTHO05D008419 1.6e-10 69.3 64 54.7
Sp5g20950 Schrenkiella parvula HOM05D006811 ORTHO05D008419 2.1e-10 68.9 76 53.9
MELO3C017973.2 Cucumis melo HOM05D006811 ORTHO05D008419 2.8e-10 68.6 64 56.2
Aa31LG2G2700 Aethionema arabicum HOM05D006811 ORTHO05D008419 3.6e-10 68.2 48 66.7
BcaB03g15309 Brassica carinata HOM05D006811 ORTHO05D008419 3.6e-10 68.2 46 71.7
BcaC08g46096 Brassica carinata HOM05D006811 ORTHO05D008419 3.6e-10 68.2 46 71.7
CARHR057790 Cardamine hirsuta HOM05D006811 ORTHO05D008419 4.7e-10 67.8 46 71.7
CsaV3_4G000630 Cucumis sativus L. HOM05D006811 ORTHO05D008419 4.7e-10 67.8 70 55.7
Eucgr.F02911 Eucalyptus grandis HOM05D006811 ORTHO05D008419 6.1e-10 67.4 73 53.4
CiPaw.03G075800 Carya illinoinensis HOM05D006811 ORTHO05D008419 8.0e-10 67.0 78 50.0
Nn4g24731 Nelumbo nucifera HOM05D006811 ORTHO05D008419 8.0e-10 67.0 63 52.4
Ah.06g191630 Amaranthus hybridus HOM05D006811 ORTHO05D008419 1.4e-09 66.2 49 67.3
Ca_17071_v3 Cicer arietinum L. HOM05D006811 ORTHO05D008419 1.4e-09 66.2 37 81.1
Gohir.A12G052300 Gossypium hirsutum HOM05D006811 ORTHO05D008419 3.0e-09 65.1 80 46.2
Potri.017G139400 Populus trichocarpa HOM05D006811 ORTHO05D008419 3.0e-09 65.1 59 52.5
Ciclev10013413m.g Citrus clementina HOM05D006811 ORTHO05D008419 4.0e-09 64.7 72 52.8
CANSAT54G1721 Cannabis sativa HOM05D006811 ORTHO05D008419 5.2e-09 64.3 38 76.3
Gohir.D12G050800 Gossypium hirsutum HOM05D006811 ORTHO05D008419 5.2e-09 64.3 80 46.2
Gorai.008G054100 Gossypium raimondii HOM05D006811 ORTHO05D008419 5.2e-09 64.3 80 46.2
Thecc.04G060000 Theobroma cacao HOM05D006811 ORTHO05D008419 6.8e-09 63.9 43 67.4
Actinidia40414 Actinidia chinensis HOM05D006811 ORTHO05D008419 8.9e-09 63.5 67 53.7
Sabra17G0117500 Salix brachista HOM05D006811 ORTHO05D008419 8.9e-09 63.5 59 52.5
GSVIVG01035212001 Vitis vinifera HOM05D006811 ORTHO05D008419 8.9e-09 63.5 47 61.7
EL10Ac4g08932 Beta vulgaris HOM05D006811 ORTHO05D008419 2.6e-08 62.0 80 45.0
Cc07_g12750 Coffea canephora HOM05D006811 ORTHO05D008419 2.6e-08 62.0 73 46.6
Aqoxy3G04154 Aquilegia oxysepala HOM05D006811 ORTHO05D008419 3.4e-08 61.6 73 45.2
PGR004G2199 Punica granatum HOM05D006811 ORTHO05D008419 4.4e-08 61.2 36 72.2
MSTRG.15636 Avicennia marina HOM05D006811 ORTHO05D008419 5.7e-08 60.8 69 46.4
DCAR_020444 Daucus carota HOM05D006811 ORTHO05D008419 7.5e-08 60.5 83 43.4
Peaxi162Scf00713g00019 Petunia axillaris HOM05D006811 ORTHO05D008419 7.5e-08 60.5 72 45.8
PGSC0003DMG400016719 Solanum tuberosum HOM05D006811 ORTHO05D008419 7.5e-08 60.5 59 49.2
Rhsim10G0185300 Rhododendron simsii HOM05D006811 ORTHO05D008419 9.8e-08 60.1 67 50.7
AUR62003402 Chenopodium quinoa HOM05D006811 ORTHO05D008419 1.7e-07 59.3 52 57.7
HanXRQChr12g0365711 Helianthus annuus HOM05D006811 ORTHO05D008419 1.7e-07 59.3 61 52.5
Sc06g0003070 Simmondsia chinensis HOM05D006811 ORTHO05D008419 1.7e-07 59.3 67 52.2
AUR62004775 Chenopodium quinoa HOM05D006811 ORTHO05D008419 2.2e-07 58.9 52 57.7
Nitab4.5_0008137g0060 Nicotiana tabacum HOM05D006811 ORTHO05D008419 2.2e-07 58.9 66 48.5
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 2.8e-07 58.5 59 50.8
CSS0033706 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 3.7e-07 58.2 76 42.1
Oeu032292.1 Olea europaea HOM05D006811 ORTHO05D008419 3.7e-07 58.2 81 45.7
TAR622G1242 Trochodendron aralioides HOM05D006811 ORTHO05D008419 4.9e-07 57.8 68 48.5
vmacro20465 Vaccinium macrocarpon HOM05D006811 ORTHO05D008419 4.9e-07 57.8 71 42.3
CDE05G3344 Ceratophyllum demersum HOM05D006811 ORTHO05D008419 8.3e-07 57.0 47 59.6
unitig_0.g2638 Utricularia gibba HOM05D006811 ORTHO05D008419 1.1e-06 56.6 38 71.1
SalBow5G0387 Salvia bowleyana HOM05D006811 ORTHO05D008419 1.4e-06 56.2 55 50.9
SalBow5G5201 Salvia bowleyana HOM05D006811 ORTHO05D008419 1.4e-06 56.2 55 50.9
ATR0807G007 Amborella trichopoda HOM05D006811 ORTHO05D008419 1.8e-06 55.8 33 78.8
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 3.1e-06 55.1 48 52.1
Lsat_1_v5_gn_2_71780 Lactuca sativa HOM05D006811 ORTHO05D008419 3.1e-06 55.1 47 59.6
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 5.4e-06 54.3 38 65.8
Os03g0120000 Oryza sativa ssp. japonica HOM05D006811 ORTHO05D008419 7.0e-06 53.9 83 44.6
PSO063G4300 Papaver somniferum HOM05D006811 ORTHO05D008419 7.0e-06 53.9 74 47.3


User provided reference genes

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