Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 8.2e-88 327.0 165 100.0
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 7.2e-84 313.9 165 96.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.2e-59 233.4 175 72.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.1e-59 232.6 175 72.6
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 8.0e-59 230.7 173 71.7
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.0e-58 230.3 173 70.5
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.4e-58 229.9 172 69.8
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 4.0e-58 228.4 174 70.7
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 6.8e-58 227.6 168 69.6
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.2e-57 226.9 172 68.6
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 7.5e-57 224.2 168 69.0
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 6.0e-54 214.5 176 65.3
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 7.8e-54 214.2 174 65.5
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.0e-53 213.8 176 67.6
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.1e-52 210.3 174 64.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.4e-50 203.4 174 66.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.2e-49 200.3 176 64.2
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 7.5e-49 197.6 179 60.9
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 7.5e-49 197.6 178 62.9
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 2.9e-48 195.7 174 62.1
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.7e-48 195.3 171 60.2
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.1e-47 193.7 178 59.6
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.4e-47 193.4 178 60.1
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 5.4e-47 191.4 177 59.3
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 7.1e-47 191.0 174 59.2
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 1.2e-46 190.3 177 59.9
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.2e-46 190.3 179 59.8
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 3.5e-46 188.7 180 60.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 4.6e-46 188.3 178 57.9
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.3e-45 186.8 178 56.7
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.7e-45 186.4 171 61.4
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.3e-45 186.0 175 57.7
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 3.9e-45 185.3 175 59.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 8.6e-45 184.1 179 57.0
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.5e-44 183.3 178 55.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.5e-44 183.3 165 59.4
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 4.3e-44 181.8 176 60.2
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.6e-44 181.4 170 56.5
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 5.6e-44 181.4 170 56.5
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 9.5e-44 180.6 170 57.1
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.6e-43 179.9 172 57.0
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.8e-43 179.1 173 59.0
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.8e-43 179.1 173 59.0
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.8e-43 179.1 173 59.0
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 6.2e-43 177.9 176 55.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 8.1e-43 177.6 176 56.8
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 8.1e-43 177.6 173 59.0
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.3e-42 176.0 182 58.2
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 5.2e-42 174.9 177 55.9
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.8e-42 174.5 175 54.9
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 6.8e-42 174.5 160 58.8
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.8e-42 174.5 167 53.9
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.0e-41 172.9 181 52.5
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 2.6e-41 172.6 163 58.3
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 3.4e-41 172.2 178 55.6
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 4.4e-41 171.8 178 59.0
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 9.9e-41 170.6 180 58.9
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 2.2e-40 169.5 185 52.4
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.4e-40 167.9 164 56.7
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 8.4e-40 167.5 181 55.8
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.4e-39 166.8 178 55.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 1.9e-39 166.4 185 53.0
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 7.1e-39 164.5 178 52.8
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 6.0e-38 161.4 179 52.5
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 2.3e-37 159.5 173 53.8
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 3.9e-37 158.7 178 52.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 5.1e-37 158.3 177 52.0
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 6.6e-37 157.9 177 50.8
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 6.6e-37 157.9 179 52.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.6e-37 157.9 187 50.8
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.1e-36 157.1 170 52.9
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.5e-36 156.8 177 50.8
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.5e-36 156.8 172 49.4
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.9e-36 156.4 171 52.6
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.9e-36 156.4 179 51.4
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.5e-36 156.0 176 50.6
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.3e-36 155.6 178 52.2
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 3.3e-36 155.6 174 52.9
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 4.3e-36 155.2 177 49.7
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 5.6e-36 154.8 173 53.2
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 5.6e-36 154.8 175 50.3
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 2.1e-35 152.9 171 54.4
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 2.8e-35 152.5 172 50.0
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 4.7e-35 151.8 164 52.4
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.2e-35 151.4 167 50.9
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.1e-34 150.6 178 51.1
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 1.8e-34 149.8 179 50.8
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 2.6e-33 146.0 182 48.9
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.4e-31 140.2 181 44.2
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.4e-31 140.2 170 45.9
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.9e-31 139.8 178 46.1
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 3.2e-31 139.0 183 46.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.7e-30 136.0 166 49.4
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 3.5e-30 135.6 125 61.6
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.8e-30 134.4 178 48.3
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.8e-30 134.4 168 46.4
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.8e-30 134.4 168 46.4
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.7e-29 133.3 179 46.9
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.3e-29 132.9 176 47.2
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.0e-29 132.5 160 48.8
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.6e-29 131.3 164 45.7
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 8.7e-29 131.0 158 50.0
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.1e-28 130.6 158 50.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-28 130.2 158 50.0
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.9e-28 129.8 170 44.7
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.9e-28 129.8 127 55.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 5.6e-28 128.3 161 48.4
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.6e-28 128.3 155 49.0
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 7.3e-28 127.9 164 48.2
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 7.3e-28 127.9 164 48.2
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 7.3e-28 127.9 164 48.2
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 7.3e-28 127.9 171 44.4
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 7.3e-28 127.9 162 45.1
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 9.6e-28 127.5 170 44.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-27 127.1 164 48.2
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.6e-27 126.7 170 43.5
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.6e-27 126.7 170 45.3
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.6e-27 126.7 160 46.2
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 2.8e-27 125.9 173 43.9
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.8e-27 125.2 165 48.5
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 8.1e-27 124.4 170 44.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 8.1e-27 124.4 170 44.1
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.1e-26 124.0 161 46.6
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.1e-26 124.0 158 48.7
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.8e-26 123.2 170 42.4
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.4e-26 122.9 177 43.5
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 2.4e-26 122.9 120 53.3
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 9.0e-26 120.9 168 45.8
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.0e-25 119.8 171 44.4
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 9.9e-25 117.5 176 43.8
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.7e-24 116.7 100 62.0
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.9e-23 113.2 132 47.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-21 107.1 149 43.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.4e-20 101.3 113 50.4
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.6e-19 100.1 118 45.8
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.0e-17 93.2 96 53.1
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 9.9e-17 90.9 186 38.2
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.7e-14 82.8 176 33.0
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.3e-13 80.5 69 62.3
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 3.0e-13 79.3 178 35.4
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.0e-13 79.3 106 45.3
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.5e-12 76.3 167 34.7
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.8e-10 70.1 166 32.5
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 2.6e-09 66.2 204 28.9


User provided reference genes

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