Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.4e-50 203.0 126 100.0
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.5e-44 183.0 125 88.0
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.9e-44 182.6 125 89.6
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.9e-44 182.6 125 87.2
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 4.3e-44 181.4 125 74.4
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 1.2e-43 179.9 126 74.6
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 1.2e-43 179.9 126 74.6
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 2.8e-43 178.7 125 87.2
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.8e-43 178.7 126 73.8
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 4.7e-43 177.9 125 76.0
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 6.2e-43 177.6 125 74.4
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 6.2e-43 177.6 125 88.0
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 6.2e-43 177.6 125 72.0
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 8.1e-43 177.2 125 74.4
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 1.4e-42 176.4 125 74.4
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.4e-42 176.4 125 71.2
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 1.4e-42 176.4 125 71.2
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.8e-42 176.0 126 73.8
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.3e-42 175.6 125 72.8
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.3e-42 175.6 126 73.8
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 4.0e-42 174.9 127 72.4
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 5.2e-42 174.5 126 71.4
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 5.2e-42 174.5 125 78.4
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 5.2e-42 174.5 125 80.0
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 3.4e-41 171.8 125 72.8
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 9.8e-41 170.2 125 70.4
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 2.2e-40 169.1 130 68.5
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.9e-40 168.7 128 69.5
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 2.9e-40 168.7 125 71.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 3.7e-40 168.3 125 69.6
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 4.9e-40 167.9 125 70.4
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 6.4e-40 167.5 125 68.8
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 6.4e-40 167.5 125 74.4
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.1e-39 166.8 125 71.2
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 1.1e-39 166.8 126 67.5
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.4e-39 166.4 125 68.8
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.9e-39 166.0 125 68.0
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 2.4e-39 165.6 125 70.4
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.4e-39 165.6 127 68.5
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 3.2e-39 165.2 125 67.2
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 3.2e-39 165.2 125 68.0
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 3.2e-39 165.2 125 70.4
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.1e-39 164.9 125 68.8
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 5.4e-39 164.5 125 69.6
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 5.4e-39 164.5 119 73.1
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 9.2e-39 163.7 125 69.6
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 1.2e-38 163.3 84 97.6
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.2e-38 163.3 126 68.3
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.6e-38 162.9 125 68.0
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 1.6e-38 162.9 126 68.3
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 1.6e-38 162.9 127 68.5
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.6e-38 162.9 126 80.2
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 2.1e-38 162.5 126 68.3
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 2.7e-38 162.2 84 91.7
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 4.6e-38 161.4 126 65.9
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 4.6e-38 161.4 124 68.5
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 6.0e-38 161.0 126 67.5
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 7.8e-38 160.6 125 68.0
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 7.8e-38 160.6 126 67.5
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.0e-37 160.2 84 89.3
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.0e-37 160.2 84 88.1
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.3e-37 159.8 121 67.8
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.7e-37 159.5 125 65.6
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.7e-37 159.5 125 65.6
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 3.0e-37 158.7 121 66.9
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 3.0e-37 158.7 121 66.9
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 3.0e-37 158.7 84 86.9
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 3.9e-37 158.3 84 88.1
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 5.1e-37 157.9 126 66.7
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 5.1e-37 157.9 126 66.7
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 5.1e-37 157.9 84 89.3
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 6.6e-37 157.5 84 89.3
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 6.6e-37 157.5 126 69.0
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 8.6e-37 157.1 84 86.9
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 1.5e-36 156.4 84 85.7
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.5e-36 156.4 84 85.7
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 1.9e-36 156.0 83 89.2
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.8e-35 152.1 84 85.7
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 3.1e-34 148.7 84 83.3
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 8.9e-34 147.1 85 78.8
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 1.5e-33 146.4 125 63.2
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 2.0e-33 146.0 84 77.4
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 2.2e-32 142.5 84 76.2
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 5.1e-29 131.3 84 76.2
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 4.3e-28 128.3 82 74.4
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 1.2e-27 126.7 125 58.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 6.2e-27 124.4 82 70.7
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 8.1e-27 124.0 136 50.0
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 2.9e-24 115.5 96 65.6
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 3.9e-21 105.1 94 61.7
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.3e-20 101.7 98 73.5
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 2.4e-18 95.9 92 59.8
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 6.9e-18 94.4 85 81.2
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 6.9e-18 94.4 84 59.5
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.4e-17 92.0 82 82.9
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 3.4e-17 92.0 88 58.0
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 2.4e-15 85.9 41 87.8
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 5.4e-15 84.7 83 56.6
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 7.1e-15 84.3 83 56.6
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.7e-14 82.4 52 75.0
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.0e-13 80.5 82 57.3
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 1.0e-13 80.5 85 56.5
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 5.1e-13 78.2 84 57.1
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.1e-12 77.0 88 52.3
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 3.6e-11 72.0 41 82.9
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 3.4e-09 65.5 86 46.5
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.9e-07 59.7 31 77.4


User provided reference genes

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