Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 1.0e-40 169.9 102 100.0
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 6.3e-38 160.6 103 97.1
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 7.8e-20 100.5 109 56.0
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 2.1e-17 92.4 109 52.3
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 3.0e-16 88.6 114 52.6
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 6.8e-16 87.4 102 51.0
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 1.2e-15 86.7 107 51.4
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 7.5e-15 84.0 107 48.6
Medtr8g013930 Medicago truncatula HOM05D008072 ORTHO05D010204 2.9e-14 82.0 109 50.5
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 4.9e-14 81.3 109 50.5
Psat4g197480 Pisum sativum HOM05D008072 ORTHO05D010204 3.2e-13 78.6 109 45.9
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 5.0e-11 71.2 113 43.4
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 6.6e-11 70.9 101 44.6
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 4.3e-10 68.2 111 40.5
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 9.5e-10 67.0 113 42.5
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 9.5e-10 67.0 113 44.2
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.2e-09 66.6 114 42.1
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 1.6e-09 66.2 113 44.2
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 1.6e-09 66.2 109 40.4
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 2.1e-09 65.9 116 38.8
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 2.1e-09 65.9 69 53.6
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 2.8e-09 65.5 113 43.4
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 3.6e-09 65.1 105 42.9
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 4.7e-09 64.7 112 40.2
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 1.1e-08 63.5 111 42.3
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 1.4e-08 63.2 103 42.7
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 1.8e-08 62.8 109 38.5
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 5.2e-08 61.2 108 38.0
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 1.2e-07 60.1 42 66.7
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 1.2e-07 60.1 42 66.7
MELO3C024449.2 Cucumis melo HOM05D008072 ORTHO05D010204 1.5e-07 59.7 106 50.9
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 1.5e-07 59.7 120 39.2
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 1.5e-07 59.7 109 38.5
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 2.6e-07 58.9 104 38.5
CANSAT56G4142 Cannabis sativa HOM05D008072 ORTHO05D010204 3.4e-07 58.5 114 43.0
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 4.4e-07 58.2 54 59.3
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 7.5e-07 57.4 42 64.3
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 7.5e-07 57.4 97 41.2
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 7.5e-07 57.4 105 38.1
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 7.5e-07 57.4 47 57.4
CiPaw.02G146800 Carya illinoinensis HOM05D008072 ORTHO05D010204 9.8e-07 57.0 42 64.3
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 9.8e-07 57.0 106 37.7
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 1.3e-06 56.6 40 67.5
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 1.3e-06 56.6 108 38.0
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 2.2e-06 55.8 55 52.7
MSTRG.9481 Avicennia marina HOM05D008072 ORTHO05D010204 2.2e-06 55.8 47 59.6
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 2.2e-06 55.8 104 40.4
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 2.2e-06 55.8 105 37.1
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 3.7e-06 55.1 40 70.0
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 3.7e-06 55.1 104 37.5
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 4.9e-06 54.7 106 34.9
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 6.4e-06 54.3 110 36.4
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 6.4e-06 54.3 105 36.2
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 8.3e-06 53.9 65 49.2


User provided reference genes

Program Settings