Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 3.3e-172 609.8 858 100.0
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 5.2e-133 479.6 809 96.0
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.9e-90 338.2 220 85.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.8e-45 188.7 614 76.7
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.4e-45 188.3 149 67.1
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 4.1e-45 187.6 151 63.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 3.0e-40 171.4 148 59.5
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.5e-39 169.1 162 54.3
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.3e-39 167.9 241 44.8
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 4.8e-38 164.1 115 80.9
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.2e-33 149.4 139 55.4
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.6e-33 149.1 556 80.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 2.7e-33 148.3 146 52.7
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 6.1e-33 147.1 150 48.7
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 7.9e-33 146.7 162 50.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.4e-32 146.0 152 47.4
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.3e-32 145.2 151 47.0
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.9e-32 144.4 168 43.5
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.5e-31 142.5 143 51.7
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.0e-31 142.1 147 48.3
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.0e-31 142.1 152 44.7
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.0e-31 142.1 162 47.5
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 3.3e-31 141.4 152 46.7
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 7.4e-31 140.2 159 45.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.7e-30 139.0 143 47.6
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.2e-30 138.7 140 50.7
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.2e-30 138.7 144 48.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 2.8e-30 138.3 139 48.9
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.8e-30 138.3 142 50.7
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 3.1e-29 134.8 139 47.5
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 3.1e-29 134.8 138 47.1
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 7.0e-29 133.7 138 47.1
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 7.0e-29 133.7 158 44.3
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 7.0e-29 133.7 143 47.6
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 9.1e-29 133.3 141 47.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.2e-28 132.9 149 45.0
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.5e-28 132.5 151 43.7
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.5e-28 132.5 152 44.7
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.5e-28 132.5 152 44.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.5e-28 132.5 141 46.8
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 7.7e-28 130.2 166 43.4
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.3e-27 129.4 141 50.4
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 6.5e-27 127.1 146 42.5
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 6.5e-27 127.1 154 42.2
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.5e-27 127.1 139 43.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 8.5e-27 126.7 159 42.8
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.9e-26 125.6 150 42.7
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.9e-26 125.6 154 43.5
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.5e-26 125.2 137 45.3
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 2.5e-26 125.2 153 43.8
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 2.5e-26 125.2 259 34.4
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 3.2e-26 124.8 148 43.2
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 4.2e-26 124.4 141 47.5
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 7.2e-26 123.6 143 45.5
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 9.4e-26 123.2 165 40.6
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 9.4e-26 123.2 149 43.6
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.2e-25 122.9 165 40.6
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.6e-25 122.5 152 42.1
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.6e-25 122.5 151 40.4
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.6e-25 122.5 149 43.6
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.6e-25 122.5 149 43.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.1e-25 122.1 164 40.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.1e-25 122.1 149 43.0
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 2.1e-25 122.1 138 42.0
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.7e-25 121.7 152 43.4
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 8.0e-25 120.2 164 40.9
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.0e-25 120.2 164 40.9
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 8.0e-25 120.2 138 48.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 8.0e-25 120.2 144 41.7
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 2.3e-24 118.6 184 38.6
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.3e-24 118.6 110 50.0
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 3.9e-24 117.9 144 45.8
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.7e-24 117.1 164 39.6
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.5e-23 115.9 149 42.3
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 2.6e-23 115.2 134 42.5
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 5.7e-23 114.0 148 40.5
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 5.7e-23 114.0 138 47.8
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 9.7e-23 113.2 166 38.6
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 9.7e-23 113.2 159 37.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-22 112.8 166 38.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.2e-22 112.1 152 37.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.2e-22 112.1 152 41.4
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 2.2e-22 112.1 153 40.5
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 3.7e-22 111.3 149 40.9
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.1e-21 107.8 160 36.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.3e-21 107.5 157 37.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 9.1e-21 106.7 127 44.1
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.2e-20 106.3 153 37.9
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.0e-20 105.5 159 35.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.6e-20 105.1 92 51.1
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 5.9e-20 104.0 148 35.8
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.3e-19 102.8 119 44.5
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.7e-19 102.4 152 36.8
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.9e-19 101.7 98 55.1
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.1e-18 99.8 156 39.7
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 1.1e-18 99.8 100 51.0
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.5e-18 99.4 140 37.9
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.9e-18 99.0 80 60.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 2.5e-18 98.6 93 53.8
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 4.2e-18 97.8 116 47.4
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 4.2e-18 97.8 59 76.3
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-17 96.3 148 35.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.1e-17 95.5 152 32.9
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.1e-17 95.5 156 39.7
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.0e-16 93.2 93 50.5
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.8e-16 92.4 249 72.7
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 5.2e-16 90.9 155 32.9
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-15 89.7 151 32.5
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.6e-15 88.6 132 35.6
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.6e-15 88.6 107 44.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 4.4e-15 87.8 111 35.1
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.3e-14 86.3 153 31.4
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.3e-14 86.3 151 35.1
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 1.7e-14 85.9 152 38.2
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.8e-14 84.3 153 32.0
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 6.3e-14 84.0 156 32.1
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 8.3e-14 83.6 132 34.1
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 8.3e-14 83.6 97 47.4
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 2.4e-13 82.0 93 46.2
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 9.1e-13 80.1 87 47.1
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.7e-12 78.6 96 44.8
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 1.0e-11 76.6 82 40.2
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.7e-11 75.9 96 41.7
arahy.Tifrunner.gnm1.ann1.BJ1JZM Arachis hypogaea HOM05D004824 ORTHO05D083260 2.2e-11 75.5 53 71.7
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.2e-11 75.5 92 41.3
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 2.2e-11 75.5 77 42.9
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 2.9e-11 75.1 157 28.0
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 3.8e-11 74.7 93 45.2
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 5.0e-11 74.3 47 70.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 1.9e-10 72.4 87 46.0
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.6e-09 69.3 89 43.8
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 4.7e-09 67.8 154 28.6
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 8.0e-09 67.0 130 26.9
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 1.0e-08 66.6 83 37.3
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.4e-08 66.2 96 38.5
SHI35270 Sapria himalayana HOM05D008459 ORTHO05D000778 1.4e-08 66.2 74 37.8
SHI40908 Sapria himalayana HOM05D008459 ORTHO05D003903 1.4e-08 66.2 77 36.4
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-08 64.7 152 24.3
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-08 64.7 152 24.3
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-08 64.7 152 24.3
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-08 64.7 127 26.8
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-07 63.2 152 24.3
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-07 63.2 152 24.3
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 2.6e-07 62.0 122 32.8
SHI49399 Sapria himalayana HOM05D008459 ORTHO05D003903 2.6e-07 62.0 76 38.2
SHI50109 Sapria himalayana HOM05D008459 ORTHO05D003903 2.6e-07 62.0 76 35.5
SHI35413 Sapria himalayana HOM05D008459 ORTHO05D003903 3.4e-07 61.6 73 37.0
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 3.4e-07 61.6 145 26.9
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 4.4e-07 61.2 94 42.6
SHI50303 Sapria himalayana HOM05D008459 ORTHO05D003903 5.7e-07 60.8 77 35.1
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 5.7e-07 60.8 147 31.3
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.7e-07 60.8 127 25.2
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 9.8e-07 60.1 148 24.3
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 9.8e-07 60.1 130 24.6
SHI41352 Sapria himalayana HOM05D008459 ORTHO05D003903 9.8e-07 60.1 76 36.8
SHI50547 Sapria himalayana HOM05D008459 ORTHO05D003903 9.8e-07 60.1 77 32.5
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 9.8e-07 60.1 76 36.8
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.7e-06 59.3 130 24.6
Glyma.11G122100 Glycine max HOM05D007675 ORTHO05D009699 2.2e-06 58.9 173 29.5
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 3.7e-06 58.2 155 22.6
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-06 58.2 164 26.8
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.8e-06 57.8 133 24.8
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 6.3e-06 57.4 127 25.2
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 8.3e-06 57.0 77 37.7


User provided reference genes

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