Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-107 391.7 187 100.0
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.1e-95 352.4 204 84.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 6.0e-95 350.9 204 84.3
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 3.1e-75 285.4 199 68.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.1e-75 285.0 196 68.9
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.3e-75 284.6 199 67.8
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 6.9e-75 284.3 199 68.3
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.5e-74 283.1 199 67.8
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.4e-74 282.0 204 66.2
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 2.2e-73 279.3 204 66.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-72 276.2 199 66.3
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 9.4e-72 273.9 203 64.0
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 7.9e-71 270.8 198 65.2
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 8.8e-70 267.3 198 64.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.1e-69 266.9 204 62.7
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 4.4e-69 265.0 204 61.3
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 5.7e-69 264.6 205 62.9
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 7.4e-69 264.2 204 60.8
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 7.4e-69 264.2 204 60.8
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.8e-68 262.3 204 59.8
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 4.8e-68 261.5 205 61.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 6.3e-68 261.2 204 59.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 8.2e-68 260.8 205 57.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 8.2e-68 260.8 204 59.8
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.1e-67 260.4 205 60.0
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 3.1e-67 258.8 206 59.7
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 3.1e-67 258.8 204 59.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 4.1e-67 258.5 204 58.3
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.1e-67 258.5 204 58.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 4.1e-67 258.5 204 59.3
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 9.1e-67 257.3 199 59.8
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.5e-66 256.5 204 57.8
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.0e-66 256.1 199 60.8
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.0e-66 256.1 202 58.9
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.5e-66 255.4 204 57.8
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 4.5e-66 255.0 204 60.8
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 5.9e-66 254.6 199 59.3
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 5.9e-66 254.6 199 59.3
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.7e-66 254.2 185 62.7
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 7.7e-66 254.2 199 60.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 7.7e-66 254.2 198 59.6
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.0e-65 253.8 204 57.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.3e-65 253.4 204 56.4
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.3e-65 253.4 199 58.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.7e-65 253.1 205 59.0
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.8e-65 251.9 197 58.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.8e-65 251.9 199 58.8
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 8.5e-65 250.8 199 58.8
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.1e-64 250.4 204 57.4
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.5e-64 250.0 204 57.8
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.9e-64 249.6 199 57.3
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.9e-64 249.6 204 57.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.5e-64 249.2 199 57.8
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 9.4e-64 247.3 204 56.9
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.2e-63 246.9 204 54.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.1e-63 246.1 204 55.4
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.6e-63 245.4 204 56.9
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.6e-63 245.4 199 56.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 4.7e-63 245.0 204 57.4
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 4.7e-63 245.0 204 57.4
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 4.7e-63 245.0 204 57.4
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 8.0e-63 244.2 204 56.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.0e-62 243.8 204 56.4
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.4e-62 243.4 199 55.3
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.8e-62 243.0 198 55.6
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.8e-62 243.0 204 56.9
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 3.0e-62 242.3 201 55.2
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 3.0e-62 242.3 202 53.0
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 6.7e-62 241.1 204 55.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.8e-62 240.7 235 52.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 8.8e-62 240.7 202 54.5
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.5e-61 240.0 203 55.2
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.4e-61 238.4 200 54.0
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 9.7e-61 237.3 204 56.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.7e-60 236.5 200 56.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 6.3e-60 234.6 204 55.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.1e-59 233.8 194 55.2
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.4e-59 233.4 204 53.9
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.4e-59 233.4 201 54.7
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.8e-59 233.0 196 58.2
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.8e-59 233.0 196 58.2
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 3.1e-59 232.3 202 52.5
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 3.1e-59 232.3 199 57.3
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 4.1e-59 231.9 204 52.5
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 7.0e-59 231.1 201 52.7
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 7.0e-59 231.1 196 58.2
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 9.1e-59 230.7 199 56.8
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.6e-58 229.2 204 52.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 5.9e-58 228.0 201 54.2
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-57 226.5 199 51.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.5e-57 224.6 204 54.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-56 223.4 184 57.6
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.9e-56 223.0 200 51.0
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.2e-56 222.2 192 51.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 6.1e-55 218.0 202 51.5
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 6.8e-54 214.5 193 54.4
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 8.8e-54 214.2 200 52.0
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.7e-52 209.9 204 52.5
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.7e-52 209.9 200 50.0
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 4.8e-52 208.4 204 48.5
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 8.3e-52 207.6 200 48.5
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 8.3e-52 207.6 205 50.2
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.1e-51 207.2 174 55.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.0e-51 204.5 182 53.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.3e-49 200.3 200 49.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.5e-49 197.6 166 57.8
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.5e-48 194.9 185 51.9
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 7.2e-48 194.5 195 47.7
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-47 191.4 198 53.0
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.8e-46 189.9 195 45.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.4e-45 185.7 185 50.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.7e-44 182.2 208 46.2
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.1e-43 180.6 198 42.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.1e-43 179.1 195 44.1
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.1e-43 178.7 152 55.3
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 5.4e-43 178.3 209 45.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.5e-42 175.6 174 51.1
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-41 173.7 147 55.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 8.6e-41 171.0 154 52.6
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.2e-40 167.9 208 43.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.6e-39 165.6 146 54.1
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.4e-38 163.7 188 43.1
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.2e-37 160.6 140 55.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.4e-37 158.7 173 46.2
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.4e-36 154.8 126 57.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.0e-30 137.5 198 37.9
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.0e-29 133.3 101 63.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-28 130.2 98 62.2
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.9e-28 128.6 208 38.5
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 8.3e-20 101.3 50 94.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.4e-19 99.8 138 42.0
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.0e-17 92.8 207 29.5
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 2.5e-16 89.7 154 33.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.2e-14 82.0 59 62.7
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-13 80.9 84 46.4
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 9.9e-13 77.8 64 57.8
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 9.2e-11 71.2 92 40.2
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-10 70.9 92 40.2
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-10 70.9 92 40.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.3e-09 67.4 77 36.4
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.6e-09 65.1 108 36.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.8e-07 59.7 206 22.3
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.8e-07 59.7 119 30.3
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 2.8e-07 59.7 39 64.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.8e-06 57.0 68 38.2


User provided reference genes

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