Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X8Y7H8 Arachis hypogaea HOM05D004125 ORTHO05D004933 2.6e-61 238.4 113 100.0
arahy.Tifrunner.gnm1.ann1.05RLXM Arachis hypogaea HOM05D004125 ORTHO05D004933 1.6e-45 186.0 113 82.3
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 2.5e-35 152.1 81 87.7
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 5.5e-35 151.0 81 86.4
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 5.5e-35 151.0 81 85.2
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 5.5e-35 151.0 81 87.7
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 7.2e-35 150.6 81 85.2
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 9.5e-35 150.2 81 87.7
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 9.5e-35 150.2 79 87.3
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 9.5e-35 150.2 81 86.4
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 1.2e-34 149.8 81 87.7
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 1.6e-34 149.4 81 87.7
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 2.1e-34 149.1 81 84.0
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 2.1e-34 149.1 78 88.5
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 2.8e-34 148.7 81 85.2
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 3.6e-34 148.3 81 85.2
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 3.6e-34 148.3 81 82.7
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 4.7e-34 147.9 81 85.2
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 6.1e-34 147.5 81 85.2
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 6.1e-34 147.5 79 87.3
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 1.0e-33 146.7 81 82.7
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 1.0e-33 146.7 81 84.0
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 1.4e-33 146.4 81 82.7
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 1.4e-33 146.4 81 82.7
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 1.4e-33 146.4 81 86.4
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 2.3e-33 145.6 81 84.0
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 2.3e-33 145.6 79 83.5
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 3.0e-33 145.2 81 84.0
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 3.0e-33 145.2 81 82.7
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 3.0e-33 145.2 81 82.7
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 3.0e-33 145.2 78 84.6
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 4.0e-33 144.8 81 81.5
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 4.0e-33 144.8 79 83.5
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 5.2e-33 144.4 81 84.0
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 6.8e-33 144.1 79 82.3
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 6.8e-33 144.1 81 81.5
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 8.8e-33 143.7 78 83.3
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 8.8e-33 143.7 79 79.7
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 8.8e-33 143.7 81 81.5
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.2e-32 143.3 81 82.7
Hma1.2p1_0614F.1_g189590 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.5e-32 142.9 78 83.3
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.5e-32 142.9 78 83.3
Hma1.2p1_0614F.1_g189605 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.5e-32 142.9 78 83.3
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 2.6e-32 142.1 79 79.7
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 2.6e-32 142.1 82 80.5
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 2.6e-32 142.1 96 75.0
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 2.6e-32 142.1 78 83.3
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 2.6e-32 142.1 78 83.3
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 3.4e-32 141.7 77 83.1
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 4.4e-32 141.4 78 82.1
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 4.4e-32 141.4 81 81.5
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 5.7e-32 141.0 78 82.1
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 5.7e-32 141.0 79 86.1
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 5.7e-32 141.0 81 80.2
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 7.5e-32 140.6 82 81.7
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 7.5e-32 140.6 79 84.8
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 7.5e-32 140.6 80 77.5
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 7.5e-32 140.6 80 77.5
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 1.7e-31 139.4 78 79.5
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 1.7e-31 139.4 81 79.0
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 1.7e-31 139.4 81 77.8
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.7e-31 139.4 79 78.5
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 2.2e-31 139.0 78 82.1
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 2.2e-31 139.0 81 77.8
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 2.8e-31 138.7 78 82.1
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 3.7e-31 138.3 81 80.2
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 4.9e-31 137.9 81 76.5
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 4.9e-31 137.9 78 82.1
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 6.3e-31 137.5 78 78.2
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 6.3e-31 137.5 77 80.5
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 1.1e-30 136.7 81 79.0
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 1.4e-30 136.3 79 78.5
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.4e-30 136.3 78 80.8
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 1.8e-30 136.0 81 79.0
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.8e-30 136.0 79 75.9
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 3.1e-30 135.2 110 63.6
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 7.0e-30 134.0 78 75.6
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 9.2e-30 133.7 81 74.1
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.2e-29 133.3 81 75.3
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.2e-29 133.3 81 75.3
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.2e-29 133.3 81 75.3
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.2e-29 133.3 78 75.6
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 2.7e-29 132.1 76 77.6
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 2.7e-29 132.1 78 75.6
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 3.5e-29 131.7 78 74.4
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 4.5e-29 131.3 82 75.6
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 1.3e-28 129.8 78 73.1
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.7e-28 129.4 78 73.1
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 1.7e-28 129.4 81 75.3
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 2.9e-28 128.6 78 74.4
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 1.1e-27 126.7 81 70.4
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 1.5e-27 126.3 78 75.6
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 2.5e-27 125.6 78 70.5
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 2.5e-27 125.6 78 73.1
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 4.3e-27 124.8 77 72.7
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 1.2e-26 123.2 78 69.2
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 2.8e-26 122.1 78 69.2
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 3.6e-26 121.7 78 69.2
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 3.6e-26 121.7 78 69.2
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 3.6e-26 121.7 78 69.2
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 3.6e-26 121.7 78 69.2
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 3.6e-26 121.7 77 71.4
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 4.7e-26 121.3 78 69.2
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 4.7e-26 121.3 78 69.2
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 6.1e-26 120.9 78 67.9
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 6.1e-26 120.9 78 67.9
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 6.1e-26 120.9 78 67.9
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 8.0e-26 120.6 78 67.9
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 1.8e-25 119.4 78 66.7
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 1.8e-25 119.4 78 67.9
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 2.3e-25 119.0 78 66.7
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 2.3e-25 119.0 78 66.7
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 2.3e-25 119.0 78 67.9
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 2.3e-25 119.0 78 66.7
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 3.0e-25 118.6 78 65.4
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 4.0e-25 118.2 79 68.4
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 5.2e-25 117.9 78 66.7
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 6.8e-25 117.5 78 67.9
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 6.8e-25 117.5 79 67.1
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 6.8e-25 117.5 80 68.8
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 8.9e-25 117.1 79 67.1
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 1.2e-24 116.7 78 66.7
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 2.0e-24 115.9 78 65.4
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 2.0e-24 115.9 78 64.1
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 2.0e-24 115.9 78 65.4
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 2.6e-24 115.5 81 67.9
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 3.4e-24 115.2 63 77.8
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 4.4e-24 114.8 78 65.4
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 7.5e-24 114.0 79 65.8
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 3.7e-23 111.7 61 78.7
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 3.7e-23 111.7 81 66.7
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.7e-23 111.7 81 66.7
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.7e-23 111.7 81 66.7
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.7e-23 111.7 81 66.7
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.1e-22 108.2 82 62.2
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 5.4e-22 107.8 82 62.2
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 1.2e-21 106.7 79 65.8
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.6e-21 106.3 78 64.1
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 7.8e-21 104.0 78 61.5
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 7.8e-21 104.0 80 63.8
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 5.0e-20 101.3 68 70.6
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 3.3e-19 98.6 68 69.1
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 2.8e-18 95.5 67 64.2
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 5.2e-17 91.3 75 58.7
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 6.8e-17 90.9 62 62.9
RhsimUnG0115500 Rhododendron simsii HOM05D004125 ORTHO05D004933 1.2e-16 90.1 80 56.2
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 2.6e-16 89.0 58 65.5
Mapoly0052s0073 Marchantia polymorpha HOM05D004125 ORTHO05D004933 1.6e-13 79.7 76 47.4
Pp3c19_5790 Physcomitrium patens HOM05D004125 ORTHO05D004933 3.0e-12 75.5 81 50.6
Pp3c21_3760 Physcomitrium patens HOM05D004125 ORTHO05D004933 2.5e-11 72.4 68 51.5
Pp3c2_28280 Physcomitrium patens HOM05D004125 ORTHO05D004933 2.0e-08 62.8 98 39.8
Lj2A109G39 Lonicera japonica HOM05D004125 ORTHO05D004933 3.4e-08 62.0 79 48.1


User provided reference genes

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