Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.2e-101 373.6 254 100.0
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 3.5e-53 212.6 196 82.7
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.1e-13 80.5 72 62.5
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 3.5e-13 79.7 61 65.6
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 3.0e-12 76.6 81 53.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.9e-12 76.3 70 58.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 5.1e-12 75.9 83 51.8
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 5.1e-12 75.9 65 64.6
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.7e-12 75.5 75 53.3
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 8.7e-12 75.1 75 53.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 8.7e-12 75.1 65 60.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 8.7e-12 75.1 66 65.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.1e-11 74.7 69 59.4
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.1e-11 74.7 75 53.3
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.5e-11 74.3 73 54.8
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.5e-11 73.6 83 50.6
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.5e-11 73.6 66 65.2
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 2.5e-11 73.6 63 58.7
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 3.3e-11 73.2 62 59.7
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 5.6e-11 72.4 63 57.1
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 5.6e-11 72.4 96 52.1
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 7.4e-11 72.0 86 48.8
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.6e-11 71.6 80 51.2
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 9.6e-11 71.6 63 61.9
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.6e-11 71.6 69 55.1
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.3e-10 71.2 72 55.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.3e-10 71.2 79 48.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.6e-10 70.9 87 44.8
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.1e-10 70.5 79 48.1
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.1e-10 70.5 69 53.6
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.1e-10 70.5 69 53.6
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.8e-10 70.1 70 51.4
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 4.8e-10 69.3 64 56.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.8e-10 69.3 83 50.6
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 4.8e-10 69.3 73 49.3
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 6.2e-10 68.9 72 52.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 8.1e-10 68.6 67 55.2
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.1e-09 68.2 86 47.7
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.8e-09 67.4 79 45.6
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.8e-09 67.4 63 54.0
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.8e-09 67.4 81 45.7
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.4e-09 67.0 85 50.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 2.4e-09 67.0 81 50.6
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 3.1e-09 66.6 72 51.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.1e-09 66.6 72 48.6
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.0e-09 66.2 64 54.7
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.0e-09 66.2 74 48.6
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 4.0e-09 66.2 65 50.8
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 4.0e-09 66.2 74 51.4
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 5.3e-09 65.9 62 54.8
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.3e-09 65.9 74 50.0
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 5.3e-09 65.9 70 50.0
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.9e-09 65.5 81 45.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.9e-09 65.5 81 45.7
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 6.9e-09 65.5 68 52.9
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 9.0e-09 65.1 68 48.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 9.0e-09 65.1 86 44.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-08 64.7 64 54.7
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.2e-08 64.7 63 54.0
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.5e-08 64.3 70 48.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.5e-08 64.3 79 44.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.5e-08 64.3 64 54.7
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 2.0e-08 63.9 72 45.8
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.0e-08 63.9 71 50.7
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 2.6e-08 63.5 78 48.7
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 2.6e-08 63.5 67 50.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.4e-08 63.2 79 46.8
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 3.4e-08 63.2 64 54.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.8e-08 62.4 78 43.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 7.6e-08 62.0 74 45.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.9e-08 61.6 63 49.2
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 9.9e-08 61.6 82 41.5
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 9.9e-08 61.6 81 44.4
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 9.9e-08 61.6 77 44.2
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.3e-07 61.2 61 50.8
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.3e-07 61.2 85 43.5
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.3e-07 61.2 72 44.4
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.3e-07 61.2 65 47.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.3e-07 61.2 78 41.0
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.7e-07 60.8 62 54.8
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.2e-07 60.5 80 43.8
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.2e-07 60.5 71 47.9
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.2e-07 60.5 62 46.8
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.2e-07 60.5 95 43.2
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.2e-07 60.5 63 49.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.2e-07 60.5 61 52.5
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 2.2e-07 60.5 71 42.3
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.9e-07 60.1 79 39.2
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 6.4e-07 58.9 64 50.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.4e-07 58.9 66 47.0
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.4e-07 58.9 62 46.8
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 8.4e-07 58.5 65 52.3
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.4e-07 58.5 79 38.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 8.4e-07 58.5 61 47.5
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 8.4e-07 58.5 65 50.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.1e-06 58.2 73 43.8
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.1e-06 58.2 62 48.4
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.4e-06 57.8 64 51.6
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.9e-06 57.4 138 34.8
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 3.2e-06 56.6 81 39.5
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 4.2e-06 56.2 58 50.0
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.2e-06 56.2 59 49.2
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 4.2e-06 56.2 58 50.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 4.2e-06 56.2 59 49.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 4.2e-06 56.2 59 49.2
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 7.1e-06 55.5 58 50.0
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.3e-06 55.1 58 48.3
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 9.3e-06 55.1 58 48.3
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 9.3e-06 55.1 59 47.5
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 9.3e-06 55.1 59 47.5
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 9.3e-06 55.1 59 47.5
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 9.3e-06 55.1 63 50.8
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 9.3e-06 55.1 58 48.3
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 9.3e-06 55.1 70 47.1


User provided reference genes

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