Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 1.8e-157 559.3 309 100.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 8.9e-144 513.8 309 94.5
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.6e-71 273.9 305 53.4
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 3.1e-64 249.6 222 61.7
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 1.2e-63 247.7 240 58.8
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.7e-63 246.5 247 57.1
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 1.3e-62 244.2 236 57.6
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.9e-61 240.4 247 62.8
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 4.5e-55 219.2 305 45.9
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 5.9e-55 218.8 309 42.7
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 1.5e-50 204.1 282 46.8
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 5.6e-45 185.7 291 40.5
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 6.4e-41 172.2 301 40.2
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 6.4e-41 172.2 306 43.5
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.2e-39 167.9 307 38.1
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.0e-38 164.9 230 43.9
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.3e-38 163.7 229 45.0
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 9.5e-37 158.3 145 71.7
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 5.2e-35 152.5 224 42.9
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 1.5e-34 151.0 301 36.9
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.7e-33 147.5 305 38.4
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.7e-33 147.5 247 41.7
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.9e-32 144.1 226 40.7
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 4.1e-32 142.9 226 40.7
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.6e-31 141.0 231 42.4
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 5.0e-30 136.0 305 38.0
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.9e-29 134.0 224 41.5
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 2.5e-29 133.7 225 45.3
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 1.2e-28 131.3 305 36.4
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 1.2e-28 131.3 304 36.5
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.6e-28 131.0 321 32.7
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.4e-27 127.9 265 34.7
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 3.1e-27 126.7 304 35.5
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 3.1e-27 126.7 304 35.9
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 1.5e-26 124.4 225 42.2
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 1.5e-26 124.4 306 36.9
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 3.4e-26 123.2 303 32.7
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 9.8e-26 121.7 144 49.3
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.7e-25 120.9 231 38.1
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.2e-25 120.6 301 31.2
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 2.9e-25 120.2 226 35.8
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 2.9e-25 120.2 305 34.4
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 1.1e-24 118.2 226 37.2
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 2.4e-24 117.1 226 36.7
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 2.7e-23 113.6 119 51.3
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 3.5e-23 113.2 249 36.1
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 3.0e-22 110.2 229 36.2
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 3.9e-22 109.8 225 39.6
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 8.6e-22 108.6 227 37.9
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 3.3e-21 106.7 227 39.2
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 5.6e-21 105.9 304 28.6
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 2.8e-20 103.6 134 44.8
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 3.6e-20 103.2 225 39.1
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 3.6e-20 103.2 236 36.4
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 8.1e-20 102.1 248 33.9
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.1e-19 101.7 305 33.4
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 1.1e-19 101.7 225 38.7
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 2.3e-19 100.5 227 33.9
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 8.9e-19 98.6 234 35.0
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 8.9e-19 98.6 306 34.0
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.9e-17 93.6 228 32.5
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 3.8e-17 93.2 301 31.2
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 4.9e-17 92.8 305 29.5
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 8.4e-17 92.0 280 28.6
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.1e-16 91.7 265 34.3
Psat3g176600 Pisum sativum HOM05D007214 ORTHO05D008907 1.4e-16 91.3 147 39.5
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 2.1e-15 87.4 82 54.9
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 1.0e-14 85.1 82 56.1
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 5.1e-14 82.8 75 58.7
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 5.1e-14 82.8 77 61.0
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 8.6e-14 82.0 225 37.3
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.1e-13 81.6 227 34.4
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 1.9e-13 80.9 299 29.8
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 2.5e-13 80.5 241 30.3
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 2.5e-13 80.5 154 38.3
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 2.5e-13 80.5 97 46.4
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 3.3e-13 80.1 238 31.1
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 4.3e-13 79.7 228 34.6
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 7.3e-13 79.0 226 30.5
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 1.2e-12 78.2 78 51.3
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.2e-12 78.2 202 36.1
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.6e-12 77.8 187 41.7
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 4.7e-12 76.3 127 39.4
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 1.1e-11 75.1 85 47.1
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.4e-11 74.7 119 37.0
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.8e-11 74.3 189 38.1
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 6.9e-11 72.4 227 30.0
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 8.9e-11 72.0 119 37.8
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.2e-10 71.6 223 30.0
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 1.2e-10 71.6 226 36.3
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.6e-10 70.5 223 28.3
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 9.9e-10 68.6 205 35.6
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 3.8e-09 66.6 92 44.6
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 3.2e-08 63.5 75 46.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 5.4e-08 62.8 197 28.4
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 2.7e-07 60.5 90 42.2
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 4.6e-07 59.7 227 33.0
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.3e-06 57.4 104 35.6
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 2.3e-06 57.4 84 41.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 3.9e-06 56.6 95 37.9


User provided reference genes

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