Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.3e-157 560.1 359 100.0
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 6.8e-95 351.7 212 86.8
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 5.0e-90 335.5 220 85.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 5.8e-46 189.1 205 50.7
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.7e-45 187.6 152 64.5
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.5e-44 183.7 149 66.4
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 3.3e-41 173.3 166 54.2
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 2.1e-40 170.6 149 59.7
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 1.2e-38 164.9 109 85.3
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.9e-37 160.2 210 45.2
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 1.6e-35 154.5 148 53.4
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.3e-34 151.4 197 45.2
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.3e-34 150.6 166 50.6
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.8e-32 143.7 168 45.2
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 3.1e-31 140.2 143 51.7
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 4.1e-31 139.8 164 45.1
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 6.9e-31 139.0 210 40.5
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 6.9e-31 139.0 163 47.2
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 4.5e-30 136.3 140 50.7
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.9e-30 136.0 168 42.3
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 5.9e-30 136.0 155 49.7
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 5.9e-30 136.0 159 45.9
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 5.9e-30 136.0 142 50.7
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.0e-29 135.2 152 47.4
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.0e-29 135.2 159 45.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.7e-29 134.4 153 44.4
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.9e-29 133.7 143 47.6
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 3.8e-29 133.3 147 46.3
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 6.5e-29 132.5 215 37.7
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 8.5e-29 132.1 155 43.9
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.2e-27 128.3 141 47.5
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.6e-27 127.9 152 44.1
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.6e-27 127.9 138 46.4
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.6e-27 127.9 168 44.0
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.1e-27 127.5 143 46.9
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.7e-27 127.1 139 46.0
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 2.7e-27 127.1 219 38.4
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.6e-27 126.3 205 38.5
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.1e-27 125.9 138 45.7
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.8e-26 124.4 198 40.9
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.8e-26 124.4 155 43.9
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.8e-26 124.4 230 36.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.9e-26 123.2 146 45.9
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 5.1e-26 122.9 212 35.8
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.1e-26 122.9 157 42.7
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 6.7e-26 122.5 199 41.7
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 8.8e-26 122.1 164 39.6
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 2.0e-25 120.9 143 46.2
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.5e-25 120.6 153 42.5
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.5e-25 120.6 139 43.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 3.3e-25 120.2 160 41.9
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 5.7e-25 119.4 139 43.2
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 9.7e-25 118.6 166 42.2
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.2e-24 117.5 137 44.5
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.2e-24 117.5 148 43.9
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.7e-24 116.7 148 43.9
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.7e-24 116.7 148 43.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.8e-24 116.3 148 43.2
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 6.3e-24 115.9 165 40.6
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 6.3e-24 115.9 152 42.1
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 8.2e-24 115.5 165 40.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 8.2e-24 115.5 197 35.5
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.4e-23 114.0 165 41.2
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 2.4e-23 114.0 187 39.0
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 3.1e-23 113.6 152 42.1
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 4.1e-23 113.2 224 31.7
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 4.1e-23 113.2 229 38.4
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 9.1e-23 112.1 174 40.2
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 9.1e-23 112.1 209 36.4
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.2e-22 111.7 194 36.6
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.5e-22 111.3 145 46.2
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.5e-22 111.3 174 39.7
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.5e-22 111.3 174 39.7
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.0e-22 110.9 151 41.1
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 2.0e-22 110.9 201 33.8
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.6e-22 110.5 153 38.6
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 7.7e-22 109.0 189 35.4
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 7.7e-22 109.0 148 40.5
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 7.7e-22 109.0 109 49.5
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 7.7e-22 109.0 154 41.6
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 3.8e-21 106.7 148 39.9
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 3.8e-21 106.7 149 44.3
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 5.0e-21 106.3 152 39.5
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 5.0e-21 106.3 159 37.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 6.5e-21 105.9 153 39.9
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.5e-20 104.0 160 36.9
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 4.2e-20 103.2 150 39.3
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.5e-20 102.8 161 37.9
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 5.5e-20 102.8 149 37.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 9.4e-20 102.1 158 38.0
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.6e-19 101.3 154 38.3
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.1e-19 100.9 149 43.0
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.1e-19 100.9 119 45.4
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.7e-19 100.5 98 54.1
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 6.1e-19 99.4 128 43.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.0e-18 98.6 153 35.9
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.3e-18 97.4 140 40.0
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 2.3e-18 97.4 101 49.5
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 3.9e-18 96.7 116 47.4
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 2.8e-16 90.5 153 39.2
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 3.7e-16 90.1 156 36.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.3e-15 86.3 153 30.1
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 9.1e-15 85.5 153 30.1
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 9.1e-15 85.5 203 28.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.2e-14 85.1 96 45.8
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.5e-14 84.7 132 35.6
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.0e-14 84.3 156 37.2
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 2.6e-14 84.0 142 35.2
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 2.6e-14 84.0 144 36.1
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 7.7e-14 82.4 111 35.1
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.7e-13 81.3 156 33.3
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.0e-13 79.7 155 31.0
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.5e-12 78.2 132 33.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.5e-12 77.4 154 31.2
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 3.2e-12 77.0 131 77.1
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.2e-12 77.0 151 31.1
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.4e-10 71.6 105 39.0
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.0e-10 70.5 87 44.8
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 5.2e-10 69.7 73 47.9
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 8.8e-10 68.9 105 37.1
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.0e-09 67.8 110 33.6
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.8e-08 63.2 152 30.9
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.3e-08 62.8 153 27.5
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.1e-07 62.0 152 25.7
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 1.8e-07 61.2 148 25.0
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.8e-07 61.2 156 26.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 7.0e-07 59.3 156 26.9
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 3.5e-06 57.0 152 25.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 4.5e-06 56.6 156 25.0
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.5e-06 56.6 128 25.8
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 4.5e-06 56.6 156 28.8
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 5.9e-06 56.2 112 30.4
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 7.7e-06 55.8 165 25.5


User provided reference genes

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