Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 5.9e-71 270.8 140 100.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 3.4e-50 201.8 140 78.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.6e-47 193.0 140 75.0
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 8.6e-46 187.2 140 72.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.7e-44 181.4 140 72.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.4e-42 175.3 140 68.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.2e-40 168.7 133 63.2
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.6e-39 166.4 140 65.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.7e-39 165.6 140 67.1
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 4.6e-39 164.9 137 62.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.7e-38 162.9 140 65.0
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.6e-36 155.2 140 67.1
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 5.3e-35 151.4 136 57.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 6.9e-35 151.0 141 63.1
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 9.0e-35 150.6 125 62.4
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.6e-34 149.1 130 60.8
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 4.5e-34 148.3 140 54.3
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 9.9e-34 147.1 134 60.4
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 9.9e-34 147.1 140 57.1
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.3e-33 146.7 129 59.7
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.9e-33 145.6 136 59.6
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.1e-32 143.7 141 56.7
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.9e-32 142.9 123 58.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.4e-32 142.5 129 58.1
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 5.4e-32 141.4 132 58.3
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 5.4e-32 141.4 129 58.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.4e-32 141.4 129 58.1
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-31 140.2 96 79.2
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.2e-31 140.2 141 56.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-31 140.2 129 57.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.6e-31 139.8 133 55.6
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.7e-31 139.0 141 57.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.6e-31 138.3 129 56.6
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 4.6e-31 138.3 129 55.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.0e-30 137.1 130 56.9
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.3e-30 136.0 132 53.0
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.3e-30 136.0 135 54.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.0e-30 135.6 132 58.3
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 8.7e-30 134.0 142 53.5
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.5e-29 133.3 135 51.1
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-29 132.9 135 53.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.5e-29 132.5 134 53.7
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 3.3e-29 132.1 130 54.6
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.6e-29 131.3 135 51.9
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 7.4e-29 131.0 127 54.3
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.2e-28 127.9 141 50.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-27 127.1 141 50.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.1e-27 127.1 131 53.4
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.1e-27 127.1 124 51.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-27 126.7 145 52.4
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.8e-27 126.3 141 50.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 3.1e-27 125.6 141 53.2
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.1e-27 125.6 130 53.8
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 5.3e-27 124.8 128 53.9
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.3e-27 124.8 144 50.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 6.9e-27 124.4 112 59.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.9e-27 124.4 130 54.6
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 9.0e-27 124.0 135 51.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.2e-26 123.6 143 48.3
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 4.9e-25 118.2 135 51.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 6.4e-25 117.9 130 51.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.1e-24 117.1 130 50.8
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.1e-24 117.1 127 52.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-24 115.2 142 54.2
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 4.6e-23 111.7 131 45.0
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 7.9e-23 110.9 136 42.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-22 110.2 142 52.1
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.3e-22 110.2 135 42.2
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.3e-22 109.4 124 46.8
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 3.9e-22 108.6 133 49.6
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 5.1e-22 108.2 135 45.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.7e-22 107.8 136 43.4
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.3e-21 105.5 122 50.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 9.6e-21 104.0 131 48.9
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.3e-20 103.6 151 43.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 2.1e-20 102.8 114 47.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 2.1e-20 102.8 121 43.8
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.1e-20 102.8 130 45.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.1e-20 102.8 146 43.2
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.8e-20 102.4 133 40.6
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 3.7e-20 102.1 113 52.2
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 4.8e-20 101.7 136 42.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.1e-20 100.9 132 47.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.1e-20 100.9 131 46.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-19 100.5 142 47.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.8e-19 99.8 124 45.2
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.1e-19 99.0 106 47.2
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.1e-19 99.0 106 47.2
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.1e-19 99.0 139 42.4
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.2e-18 97.1 140 42.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.2e-18 97.1 126 40.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.4e-18 95.5 106 47.2
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 7.6e-18 94.4 114 44.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 7.6e-18 94.4 130 40.8
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.0e-17 94.0 130 40.8
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-17 93.6 96 51.0
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.7e-17 93.2 106 46.2
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.7e-17 93.2 106 46.2
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.7e-17 93.2 138 43.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.2e-17 92.8 101 49.5
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.8e-17 92.0 117 46.2
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.1e-16 90.5 116 50.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.1e-16 90.5 106 47.2
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.4e-16 90.1 102 47.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.5e-16 89.4 106 46.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 5.5e-16 88.2 102 45.1
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 5.5e-16 88.2 102 45.1
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 7.1e-16 87.8 102 44.1
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 9.3e-16 87.4 106 42.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 9.3e-16 87.4 106 42.5
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 9.3e-16 87.4 116 44.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 9.3e-16 87.4 109 46.8
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.2e-15 87.0 106 45.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.5e-15 85.5 129 41.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.6e-15 85.1 113 46.9
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.3e-14 82.8 113 46.0
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 5.1e-14 81.6 145 38.6
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.9e-13 79.7 129 38.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 5.7e-13 78.2 131 38.9
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.7e-12 75.5 111 42.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.7e-12 75.5 139 38.1
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.9e-11 71.2 113 47.8
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.0e-10 69.7 130 35.4
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.0e-09 67.4 134 35.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.0e-09 67.4 134 35.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.3e-09 67.0 110 43.6
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 5.0e-09 65.1 123 39.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 5.0e-09 65.1 133 30.1
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.4e-08 63.5 131 32.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 5.5e-08 61.6 123 31.7
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 5.5e-08 61.6 121 33.1
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 5.5e-08 61.6 139 35.3
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 9.3e-08 60.8 133 33.1
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 2.7e-07 59.3 130 31.5
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 3.6e-07 58.9 110 31.8
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 4.6e-07 58.5 138 29.7
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 6.1e-07 58.2 143 29.4
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.3e-06 57.0 136 33.8
Zm00001eb045580 Zea mays HOM05D037252 ORTHO05D049526 1.3e-06 57.0 144 30.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.3e-06 56.2 107 39.3
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.0e-06 55.8 130 33.8
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 3.9e-06 55.5 130 33.8


User provided reference genes

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