Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 2.9e-42 174.9 90 100.0
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 2.9e-42 174.9 90 100.0
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 2.9e-42 174.9 90 100.0
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 1.5e-27 125.9 67 95.5
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 4.9e-18 94.4 88 52.3
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 4.9e-18 94.4 88 52.3
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 1.6e-16 89.4 88 51.1
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 2.7e-16 88.6 75 61.3
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 4.6e-16 87.8 84 54.8
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 4.6e-16 87.8 84 54.8
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 1.3e-15 86.3 74 58.1
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.6e-14 80.9 79 54.4
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 9.6e-14 80.1 70 60.0
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.1e-13 79.0 79 50.6
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 1.1e-12 76.6 73 50.7
PGSC0003DMG400017853 Solanum tuberosum HOM05D008283 ORTHO05D009928 5.3e-12 74.3 78 51.3
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.0e-12 73.6 81 49.4
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.0e-12 73.6 81 49.4
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.0e-12 73.6 81 49.4
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 9.0e-12 73.6 84 42.9
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-11 73.2 69 53.6
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 2.0e-11 72.4 85 45.9
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 3.4e-11 71.6 81 42.0
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 3.4e-11 71.6 73 46.6
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 4.4e-11 71.2 73 43.8
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 7.6e-11 70.5 70 44.3
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.9e-11 70.1 81 48.1
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 8.4e-10 67.0 81 45.7
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 8.4e-10 67.0 72 45.8
FAN09G4124 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.1e-09 66.6 62 45.2
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 1.1e-09 66.6 81 42.0
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.4e-09 66.2 74 47.3
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.4e-09 65.5 79 45.6
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 4.2e-09 64.7 82 35.4
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 4.2e-09 64.7 82 35.4
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 7.1e-09 63.9 74 43.2
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 9.3e-09 63.5 76 43.4
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 1.6e-08 62.8 72 43.1
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 1.6e-08 62.8 72 43.1
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 1.6e-08 62.8 72 43.1
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 1.6e-08 62.8 72 43.1
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 2.1e-08 62.4 74 41.9
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 2.1e-08 62.4 74 41.9
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 2.1e-08 62.4 74 41.9
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 2.1e-08 62.4 74 41.9
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 2.7e-08 62.0 79 40.5
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 3.5e-08 61.6 72 41.7
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.3e-07 59.7 66 43.9
FAN22G2261 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.7e-07 59.3 74 44.6
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.0e-07 58.5 70 42.9
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 3.9e-07 58.2 84 38.1
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 1.5e-06 56.2 74 41.9
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 9.6e-06 53.5 57 45.6


User provided reference genes

Program Settings