Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 6.2e-194 680.6 351 100.0
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 5.3e-193 677.6 351 99.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.1e-153 545.0 354 81.1
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.2e-152 543.5 355 82.0
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.0e-151 538.1 354 80.8
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.5e-150 535.8 352 81.0
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.7e-149 531.6 354 79.4
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 4.4e-147 525.0 354 78.5
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.3e-146 523.5 355 77.2
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.8e-146 522.3 354 79.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.4e-145 520.0 351 77.5
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.0e-144 516.2 354 77.4
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.6e-136 490.0 355 73.5
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 2.9e-130 469.2 335 73.1
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.9e-130 469.2 307 77.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.9e-130 468.4 310 76.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 9.2e-129 464.2 315 76.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.7e-128 462.6 305 75.4
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.7e-128 462.6 325 72.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.6e-128 461.8 304 74.7
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.6e-128 461.8 300 76.3
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 6.0e-128 461.5 309 75.1
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 6.0e-128 461.5 309 74.4
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.0e-127 460.7 313 73.8
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.7e-127 459.9 305 72.1
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.9e-127 458.8 304 78.6
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 8.6e-127 457.6 354 69.5
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 8.6e-127 457.6 296 76.0
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 3.3e-126 455.7 315 72.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.3e-126 455.7 349 69.1
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 4.3e-126 455.3 337 69.7
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.6e-126 454.9 305 72.5
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.2e-125 453.8 333 70.0
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.1e-125 453.0 333 69.4
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 2.1e-125 453.0 309 73.5
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.7e-125 451.8 347 67.4
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.7e-125 451.8 333 69.7
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 6.2e-125 451.4 345 67.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.0e-125 451.1 331 69.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 8.0e-125 451.1 350 66.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 8.0e-125 451.1 356 67.7
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-124 450.7 327 71.3
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.4e-124 450.3 307 73.3
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.8e-124 449.9 347 66.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 2.3e-124 449.5 352 67.6
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.1e-124 449.1 346 67.9
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 3.1e-124 449.1 282 78.4
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.2e-124 448.4 348 66.1
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.2e-124 448.4 327 70.9
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.8e-124 448.0 330 70.3
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.9e-124 447.6 305 72.8
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 8.9e-124 447.6 304 72.4
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.2e-123 447.2 299 73.2
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.5e-123 446.8 355 67.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.5e-123 446.8 305 73.1
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.4e-123 445.3 299 74.2
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.5e-123 444.5 272 80.9
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 9.8e-123 444.1 311 73.3
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.8e-123 444.1 310 71.9
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.3e-122 443.7 356 66.0
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.3e-122 443.7 280 77.1
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.3e-122 443.7 339 66.1
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.2e-122 443.0 341 69.2
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.2e-122 443.0 282 76.6
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.9e-122 442.6 310 71.9
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 8.3e-122 441.0 316 71.8
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.4e-121 440.3 301 71.8
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.4e-121 440.3 343 65.6
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.9e-121 439.9 304 70.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.9e-121 439.9 312 73.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.9e-121 439.9 354 66.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.1e-121 438.7 352 65.1
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 4.1e-121 438.7 307 72.6
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.4e-121 438.3 298 71.5
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 7.1e-121 438.0 283 74.6
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 9.2e-121 437.6 337 67.4
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 9.2e-121 437.6 276 76.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 1.2e-120 437.2 274 76.6
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.2e-120 437.2 350 66.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.6e-120 436.8 307 71.7
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.6e-120 436.8 304 73.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 2.1e-120 436.4 347 64.0
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 2.7e-120 436.0 276 76.4
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 4.6e-120 435.3 307 71.7
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.6e-120 435.3 342 66.7
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.0e-120 434.9 311 70.7
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 6.0e-120 434.9 342 66.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 6.0e-120 434.9 342 66.7
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 6.0e-120 434.9 325 68.0
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 7.8e-120 434.5 342 66.7
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 7.8e-120 434.5 303 71.9
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-119 433.3 365 61.9
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.3e-119 433.0 322 69.3
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.0e-119 432.6 307 71.0
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 3.9e-119 432.2 342 66.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 5.1e-119 431.8 308 71.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 5.1e-119 431.8 308 71.4
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.1e-119 431.8 335 66.6
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 8.6e-119 431.0 337 66.8
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.6e-119 431.0 288 72.6
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.9e-118 429.9 313 69.3
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-118 429.5 308 70.8
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 5.6e-118 428.3 310 68.4
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 7.3e-118 427.9 342 65.2
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 9.5e-118 427.6 353 65.2
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.2e-117 427.2 303 69.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.2e-117 427.2 272 76.5
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.1e-116 424.1 312 69.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.1e-116 424.1 274 74.8
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.1e-116 424.1 275 71.6
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.4e-116 423.7 272 75.0
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.0e-116 422.2 280 73.9
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 6.8e-116 421.4 265 77.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.6e-115 417.9 285 73.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.6e-115 417.9 281 74.4
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.4e-113 412.9 279 71.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.1e-113 412.1 326 65.0
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 5.4e-113 411.8 330 66.1
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.6e-112 408.7 344 59.9
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.6e-112 408.7 288 69.4
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.3e-111 407.1 302 65.6
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 3.3e-110 402.5 279 69.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.3e-110 401.4 285 66.7
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-109 400.2 307 67.8
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 2.1e-109 399.8 334 62.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.7e-109 398.7 311 68.2
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.8e-108 396.7 330 63.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 5.2e-108 395.2 365 57.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.0e-107 393.3 315 64.4
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 2.2e-106 389.8 342 62.9
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 5.4e-105 385.2 384 57.0
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 7.8e-104 381.3 345 60.9
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 3.9e-103 379.0 301 65.4
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 5.6e-102 375.2 275 66.5
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-101 373.6 306 62.7
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.6e-101 372.5 311 64.0
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.9e-97 360.1 275 64.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.5e-94 350.5 308 57.5
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.5e-94 349.7 274 64.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 5.6e-94 348.6 224 75.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 3.0e-87 326.2 186 84.9
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.5e-82 308.5 261 65.1
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 2.5e-81 306.6 288 58.3
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.7e-79 298.1 292 55.1
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.3e-78 295.8 183 80.9
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.1e-77 293.5 343 47.5
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.4e-76 290.8 274 51.8
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.5e-72 276.2 215 67.4
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.0e-63 248.1 218 61.5
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.4e-63 247.7 239 59.0
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 3.0e-63 246.5 174 73.6
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 7.2e-57 225.3 220 58.6
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.7e-56 223.4 312 43.9
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.8e-53 212.6 123 81.3
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 4.1e-52 209.5 178 57.3
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 8.5e-50 201.8 319 43.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 5.2e-47 192.6 175 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.7e-45 186.4 182 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.1e-36 156.8 138 59.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 1.6e-35 154.5 90 80.0
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.7e-32 143.7 77 85.7
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.1e-28 131.7 280 31.1
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 6.6e-26 122.5 89 69.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.6e-26 122.1 75 80.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 4.7e-24 116.3 148 50.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-22 111.7 66 84.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.4e-22 109.8 164 40.9
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.5e-19 100.1 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.8e-16 90.5 83 55.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.3e-09 67.0 86 43.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.3e-09 65.9 179 28.5


User provided reference genes

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