Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.1e-133 479.9 249 100.0
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.1e-133 479.9 249 100.0
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 7.5e-101 370.9 233 79.8
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.5e-96 356.7 239 74.9
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 1.2e-95 353.6 234 74.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.1e-95 352.8 246 72.4
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 4.7e-95 351.7 238 73.5
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 1.1e-94 350.5 247 72.1
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.8e-94 349.7 235 74.9
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 2.0e-93 346.3 235 73.6
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.6e-93 345.9 236 72.0
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 4.4e-93 345.1 254 70.1
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 5.8e-93 344.7 244 70.5
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 9.8e-93 344.0 247 71.7
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 9.8e-93 344.0 247 71.7
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 3.7e-92 342.0 232 72.0
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 7.0e-91 337.8 244 67.6
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.0e-90 336.3 239 69.9
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 3.9e-89 332.0 248 66.1
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 3.9e-89 332.0 232 72.4
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 3.9e-89 332.0 235 68.1
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 5.0e-89 331.6 241 70.1
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 8.6e-89 330.9 249 67.9
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 1.9e-88 329.7 239 67.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 2.5e-88 329.3 235 67.2
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 2.5e-88 329.3 237 69.6
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 4.3e-88 328.6 245 70.6
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 5.6e-88 328.2 228 71.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 9.5e-88 327.4 236 70.3
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.1e-87 326.2 233 69.5
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.6e-87 325.5 235 66.4
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 3.6e-87 325.5 248 65.3
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 6.2e-87 324.7 224 72.3
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 6.2e-87 324.7 243 67.1
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 8.1e-87 324.3 245 66.9
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 8.1e-87 324.3 226 69.0
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.4e-86 323.6 234 70.5
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-86 323.2 235 66.0
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.1e-86 322.4 235 66.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 3.1e-86 322.4 240 68.8
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 5.2e-86 321.6 234 68.4
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.6e-85 319.3 237 66.7
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 2.6e-85 319.3 220 72.7
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 3.4e-85 318.9 237 66.7
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 4.4e-85 318.5 234 67.1
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 7.5e-85 317.8 225 68.4
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 7.5e-85 317.8 237 66.2
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 9.9e-85 317.4 236 68.6
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.7e-84 316.6 241 66.4
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 2.2e-84 316.2 226 72.1
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 2.2e-84 316.2 235 68.1
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 2.2e-84 316.2 244 66.4
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 2.2e-84 316.2 238 68.5
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.7e-84 315.5 242 66.9
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 6.4e-84 314.7 241 66.0
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.9e-83 313.2 235 68.1
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 2.4e-83 312.8 261 66.7
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 4.1e-83 312.0 251 66.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 5.4e-83 311.6 222 70.3
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.4e-83 311.6 235 67.7
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 5.4e-83 311.6 234 67.9
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.2e-82 310.5 249 61.8
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.2e-82 310.5 248 62.5
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 3.5e-82 308.9 238 63.0
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 6.0e-82 308.1 222 69.8
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.3e-81 307.0 247 59.9
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.3e-81 307.0 237 64.6
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 1.7e-81 306.6 237 65.8
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 3.9e-81 305.4 247 63.2
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 6.6e-81 304.7 245 62.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 6.6e-81 304.7 239 64.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 8.6e-81 304.3 248 61.7
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.5e-80 303.5 235 63.8
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.5e-80 303.5 237 65.4
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 3.3e-80 302.4 245 61.6
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 3.3e-80 302.4 246 62.2
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.3e-80 302.4 240 67.9
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 5.6e-80 301.6 265 61.5
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 7.3e-80 301.2 231 65.4
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 9.5e-80 300.8 243 61.3
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.2e-79 300.4 243 61.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.6e-79 300.1 251 61.8
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 4.7e-79 298.5 240 62.5
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 4.7e-79 298.5 225 63.6
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 6.2e-79 298.1 231 66.2
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.4e-78 297.0 237 66.2
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 8.9e-78 294.3 225 67.1
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 8.9e-78 294.3 231 61.9
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 2.0e-77 293.1 204 70.1
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 1.4e-75 287.0 196 73.0
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 7.8e-74 281.2 229 62.0
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 2.5e-72 276.2 228 60.5
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 4.3e-72 275.4 228 59.2
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 7.3e-72 274.6 235 60.0
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 2.1e-71 273.1 375 43.2
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 3.0e-65 252.7 231 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.0e-57 227.6 229 54.1
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.0e-57 227.6 219 52.5
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 2.5e-56 223.0 199 57.3
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 3.3e-56 222.6 206 55.8
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 3.3e-56 222.6 183 59.6
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 2.4e-54 216.5 207 60.9
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 2.4e-51 206.5 138 73.2
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 4.2e-43 179.1 136 62.5
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 7.1e-43 178.3 257 44.0
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.4e-33 147.5 98 71.4
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 2.3e-33 146.7 101 69.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.4e-30 137.5 114 59.6
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.1e-24 117.9 78 75.6
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 5.5e-19 99.0 226 35.0
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 2.8e-07 60.1 192 26.0
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 1.4e-06 57.8 163 28.8
Pp3c25_4890 Physcomitrium patens HOM05D001530 ORTHO05D003676 3.1e-06 56.6 238 25.2
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 7.0e-06 55.5 241 26.1


User provided reference genes

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