Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 0.0e+00 1278.8 813 100.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.2e-283 979.9 776 87.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 6.9e-119 432.6 530 70.9
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 2.2e-117 427.6 564 64.5
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 2.2e-117 427.6 529 70.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.6e-112 411.4 529 72.4
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.8e-111 407.9 532 70.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 9.3e-108 395.6 536 68.1
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.3e-106 391.7 530 75.8
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.8e-104 384.0 529 71.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 6.2e-104 382.9 540 61.9
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 6.9e-103 379.4 535 69.2
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.9e-101 374.0 579 63.7
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 9.3e-100 369.0 542 65.9
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.3e-98 364.4 538 61.2
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.7e-97 359.8 540 65.9
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.6e-97 359.0 544 65.3
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.7e-96 357.1 575 60.0
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.1e-92 345.5 538 62.5
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 4.2e-92 343.6 537 59.2
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.1e-91 341.3 539 66.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.1e-91 341.3 541 68.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.1e-91 341.3 565 63.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 6.1e-91 339.7 540 69.6
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.1e-91 339.7 565 63.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.0e-90 337.4 573 61.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 8.7e-90 335.9 540 63.0
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.1e-89 335.5 541 61.9
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 5.7e-89 333.2 568 61.6
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-87 328.6 560 62.1
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.8e-87 328.2 555 61.4
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.4e-87 327.8 523 66.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.1e-87 327.0 543 61.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 6.9e-87 326.2 539 58.4
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.2e-86 325.5 567 45.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.7e-86 322.8 541 63.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.0e-85 322.4 554 69.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.0e-85 322.4 533 65.3
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.1e-84 318.9 538 67.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.1e-84 318.9 536 67.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 2.1e-83 314.7 539 61.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.4e-82 312.0 439 62.4
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.8e-82 311.6 535 66.9
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.0e-82 310.8 540 63.7
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.1e-82 310.1 580 56.6
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.5e-81 308.5 539 55.7
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 8.2e-80 302.8 566 59.2
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-79 302.4 546 61.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.1e-79 302.4 566 60.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.2e-78 298.9 548 55.8
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.2e-78 298.9 560 61.6
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.5e-78 298.5 195 81.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.4e-78 297.4 535 60.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 5.9e-78 296.6 423 73.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 5.9e-78 296.6 537 65.4
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 7.7e-78 296.2 450 64.2
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.0e-77 295.8 544 55.3
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.2e-77 294.7 594 56.4
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.2e-77 294.7 568 60.2
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.2e-77 294.7 565 63.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 7.2e-76 289.7 501 58.1
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.2e-75 288.9 479 54.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.6e-75 288.5 553 57.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-75 288.1 181 84.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.6e-75 287.3 542 59.8
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.7e-75 287.0 547 62.3
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 6.1e-75 286.6 456 68.2
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.1e-75 286.6 173 87.3
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 6.1e-75 286.6 174 82.2
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.0e-74 285.8 558 51.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.4e-74 285.4 450 68.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.8e-74 285.0 583 55.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 3.0e-74 284.3 531 65.2
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 3.0e-74 284.3 557 62.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.1e-74 283.5 448 73.0
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 8.8e-74 282.7 462 64.9
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 8.8e-74 282.7 578 56.7
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.6e-73 281.2 468 59.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 5.7e-73 280.0 510 58.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 5.7e-73 280.0 175 83.4
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 7.4e-73 279.6 526 58.7
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 9.7e-73 279.3 452 64.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.7e-72 277.3 549 56.3
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 8.2e-72 276.2 540 59.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 8.2e-72 276.2 442 56.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.6e-70 271.2 535 58.5
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 4.5e-70 270.4 455 61.8
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.9e-69 267.7 543 49.2
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.9e-69 267.7 447 65.3
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.8e-69 267.3 172 83.1
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 6.5e-69 266.5 163 82.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.5e-69 266.2 178 78.7
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.9e-68 265.0 545 56.3
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.2e-68 264.2 185 75.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 4.2e-68 263.8 501 60.5
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 4.2e-68 263.8 188 73.9
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.7e-67 261.2 184 75.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.7e-67 260.4 457 56.0
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.4e-66 258.8 459 66.4
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.4e-66 258.8 527 49.1
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.0e-66 257.7 461 62.7
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.0e-66 257.7 574 55.6
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 4.0e-66 257.3 163 80.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 4.0e-66 257.3 582 55.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.5e-65 255.4 186 72.6
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.3e-65 254.2 455 65.5
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.3e-65 254.2 185 73.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 9.7e-65 252.7 144 88.2
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 9.7e-65 252.7 175 77.1
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 6.3e-64 250.0 458 64.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.1e-63 249.2 545 60.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.1e-63 249.2 458 62.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-63 248.1 178 73.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-63 246.5 174 73.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 3.5e-62 244.2 456 52.0
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.3e-61 242.3 480 52.3
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.2e-61 241.5 461 64.4
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-60 238.4 455 57.6
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-60 238.0 157 77.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-60 237.7 454 50.7
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 6.1e-59 233.4 456 55.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 8.0e-59 233.0 576 50.5
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-58 231.9 134 84.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.8e-58 231.9 453 53.9
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-58 231.5 454 49.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-58 230.7 133 85.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 4.0e-58 230.7 130 86.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-57 228.8 170 71.8
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 7.5e-57 226.5 133 83.5
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-56 225.3 181 70.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.7e-56 225.3 144 81.9
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 4.8e-56 223.8 131 87.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-55 220.3 133 81.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-55 220.3 130 83.1
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-55 219.9 453 49.0
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 9.1e-55 219.5 175 70.9
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-54 217.2 178 68.0
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-53 215.7 174 70.7
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-53 215.7 478 46.0
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-53 215.7 174 70.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-53 214.2 453 37.3
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.5e-52 212.2 178 66.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-51 207.6 449 41.2
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 4.7e-51 207.2 139 80.6
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 5.9e-46 190.3 176 61.4
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.2e-43 182.6 158 63.3
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.1e-43 181.8 99 91.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-42 177.6 124 76.6
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-40 172.6 137 67.9
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.8e-39 168.7 130 73.8
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 9.2e-39 166.4 106 79.2
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-37 162.9 470 56.4
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-37 162.5 104 76.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.5e-36 158.3 92 83.7
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 5.2e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.7e-32 145.6 136 58.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.7e-30 138.3 85 78.8
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.7e-29 135.6 85 77.6
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.7e-29 135.6 71 94.4
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.6e-29 133.7 176 49.4
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.5e-28 131.7 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-26 123.6 86 69.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 6.8e-26 123.6 201 44.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-25 122.1 86 68.6
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-21 109.0 69 76.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.7e-21 109.0 65 81.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-21 108.6 65 81.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.1e-19 102.1 101 57.4
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-18 98.6 69 72.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.3e-18 98.6 52 92.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 3.4e-17 94.7 154 42.2
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.2e-16 92.0 163 42.9
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.9e-15 89.0 534 39.9
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-13 82.0 94 57.4
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 5.1e-13 80.9 93 54.8
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-11 75.5 82 58.5
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-09 68.6 64 59.4
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 9.9e-09 66.6 55 60.0
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.2e-07 61.6 52 59.6


User provided reference genes

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