Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.6e-142 507.7 273 100.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 8.5e-106 387.5 273 82.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 5.9e-83 311.6 244 70.5
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 7.7e-83 311.2 245 67.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.0e-79 300.8 245 70.2
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.3e-77 291.6 264 66.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.4e-76 290.4 233 72.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 5.4e-76 288.5 231 67.1
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 7.0e-76 288.1 216 69.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.0e-76 288.1 209 69.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.7e-75 286.2 315 56.5
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.3e-74 283.9 248 64.5
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.3e-74 283.9 244 66.4
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.9e-73 280.0 221 67.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.3e-73 278.9 271 58.3
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 5.6e-73 278.5 248 62.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 9.5e-73 277.7 222 69.8
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.1e-72 276.6 244 67.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 8.0e-72 274.6 239 61.1
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.4e-71 273.9 213 66.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.4e-71 273.9 246 61.8
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 2.3e-71 273.1 231 64.1
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 2.3e-71 273.1 231 68.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.1e-71 272.7 224 71.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.0e-71 272.3 236 62.3
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 5.2e-71 271.9 245 59.6
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 6.8e-71 271.6 223 65.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.8e-71 271.6 243 58.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 2.0e-70 270.0 243 66.7
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.0e-70 270.0 245 61.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.0e-70 270.0 269 56.5
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.8e-70 268.5 243 64.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.8e-70 268.5 243 65.0
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 7.5e-70 268.1 213 69.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 9.8e-70 267.7 222 65.8
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.8e-70 267.7 245 64.1
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 9.8e-70 267.7 235 60.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.9e-69 266.2 224 69.2
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.7e-69 265.8 243 64.2
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 3.7e-69 265.8 233 69.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 4.9e-69 265.4 244 59.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 6.4e-69 265.0 244 59.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.4e-69 265.0 244 59.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-68 264.2 218 63.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.1e-68 262.3 216 63.9
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 4.1e-68 262.3 244 60.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.1e-68 262.3 242 63.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.1e-68 262.3 219 68.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.4e-68 261.9 225 68.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 9.2e-68 261.2 225 67.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 9.2e-68 261.2 245 61.6
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.5e-67 259.2 224 62.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-66 257.7 249 56.6
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.3e-66 257.3 294 55.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.9e-65 253.4 225 66.2
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 9.5e-65 251.1 213 64.8
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.6e-64 250.4 275 56.0
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.8e-64 249.6 227 63.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.8e-64 249.6 210 59.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-63 247.7 275 58.5
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-63 246.9 238 56.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.3e-63 246.5 232 60.8
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.3e-63 246.5 237 57.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 3.1e-63 246.1 232 62.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.0e-63 245.7 214 61.2
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.0e-63 245.7 231 61.0
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.2e-63 245.4 241 58.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.8e-63 245.0 231 61.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.9e-63 244.6 211 61.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-62 244.2 231 59.3
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.5e-62 243.8 225 63.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.5e-62 243.8 241 57.3
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.5e-62 243.8 228 59.2
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.6e-62 243.0 249 55.8
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 3.4e-62 242.7 227 62.6
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.8e-62 241.9 234 55.6
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 7.5e-62 241.5 148 98.6
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 6.4e-61 238.4 228 58.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 8.3e-61 238.0 186 69.9
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.4e-60 237.3 252 57.1
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.2e-60 236.1 237 58.6
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-60 236.1 243 61.7
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.1e-60 235.7 242 60.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 4.1e-60 235.7 244 54.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 7.1e-60 235.0 219 57.1
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.3e-58 230.7 231 61.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.3e-58 229.9 244 54.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.0e-58 229.6 251 55.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.9e-58 229.2 207 56.5
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.6e-58 228.0 247 54.3
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.6e-58 228.0 213 58.7
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.1e-57 227.6 234 63.2
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.3e-57 226.1 250 55.6
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.6e-57 225.3 226 62.8
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.1e-56 223.4 187 64.2
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.6e-56 222.6 221 52.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.1e-55 221.1 265 48.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 6.8e-55 218.4 206 56.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 6.8e-55 218.4 206 56.3
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.4e-54 216.1 252 51.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 9.9e-54 214.5 187 70.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.9e-53 213.0 186 63.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-51 207.6 255 49.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-51 207.6 255 49.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-51 207.6 230 56.5
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.6e-51 207.2 255 49.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-51 207.2 255 49.0
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.1e-51 206.8 231 56.3
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-51 206.5 255 49.0
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-51 205.7 230 56.1
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 7.8e-51 204.9 244 54.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.0e-50 204.5 247 50.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.9e-50 202.6 251 50.6
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 6.6e-50 201.8 238 51.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-49 201.1 234 53.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.5e-49 199.9 214 50.9
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.3e-49 199.1 169 60.4
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 5.6e-49 198.7 192 55.7
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-48 197.6 198 60.1
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-48 197.6 238 54.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.1e-48 196.8 163 68.7
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.8e-48 196.4 266 50.4
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 8.1e-48 194.9 184 54.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 8.1e-48 194.9 162 69.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-47 194.1 245 48.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.2e-46 191.0 162 61.1
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.8e-46 188.7 204 54.4
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 7.6e-46 188.3 190 56.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 4.9e-45 185.7 271 46.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-44 184.5 205 48.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 6.0e-43 178.7 192 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.7e-42 177.2 166 53.6
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.7e-42 177.2 205 52.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.4e-37 158.7 141 61.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.2e-36 156.4 148 62.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.7e-35 153.3 186 46.8
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 6.0e-35 152.1 221 41.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.0e-34 151.4 104 71.2
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-34 151.4 112 81.2
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 6.6e-34 148.7 238 42.0
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.3e-33 145.2 152 59.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 6.9e-31 138.7 164 57.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 9.0e-31 138.3 86 70.9
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 9.0e-31 138.3 150 56.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.9e-29 132.5 148 64.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 4.9e-29 132.5 183 39.9
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-28 130.6 140 49.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 5.4e-28 129.0 158 58.2
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.6e-27 127.5 138 60.1
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.3e-26 123.6 80 67.5
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.1e-26 122.5 90 63.3
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 5.6e-25 119.0 248 40.7
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.1e-24 117.1 186 38.7
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.4e-23 114.4 156 60.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.5e-22 109.4 70 64.3
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.8e-22 109.0 104 68.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.6e-19 100.9 212 37.7
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.6e-19 100.9 122 41.8
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 7.9e-19 98.6 139 51.8
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 3.0e-18 96.7 122 40.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.3e-16 91.3 99 57.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.2e-13 80.5 110 48.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.2e-12 76.6 53 56.6
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 2.1e-11 73.9 115 38.3
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 9.7e-09 65.1 50 76.0
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 9.7e-09 65.1 50 76.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.4e-07 60.5 59 44.1
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.4e-07 60.5 50 54.0
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.2e-06 58.2 62 56.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.0e-06 57.4 63 49.2
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 2.6e-06 57.0 59 40.7
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.6e-06 57.0 57 47.4
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.4e-06 56.6 46 56.5
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 5.9e-06 55.8 93 39.8
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.0e-05 55.1 93 38.7


User provided reference genes

Program Settings