Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.1e-160 568.2 315 100.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-136 490.3 316 81.6
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.5e-90 337.0 174 93.1
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-84 317.4 174 89.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.8e-65 252.7 177 71.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 9.3e-64 248.1 184 67.9
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.7e-63 246.5 183 67.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 6.0e-63 245.4 181 71.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.3e-62 244.2 184 68.5
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 8.7e-62 241.5 179 68.2
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.9e-61 240.4 179 68.7
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.9e-61 240.4 176 67.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.6e-61 238.8 177 67.2
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.3e-60 237.7 183 68.3
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.1e-60 236.9 177 66.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.1e-60 235.0 185 64.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.1e-59 233.0 180 64.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.0e-59 232.6 179 65.9
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 6.9e-59 231.9 181 66.3
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 9.0e-59 231.5 172 68.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.0e-58 230.3 182 64.8
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.6e-58 229.9 182 63.7
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 5.8e-58 228.8 186 62.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 7.6e-58 228.4 179 67.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 7.6e-58 228.4 179 66.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.3e-57 227.6 189 60.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.9e-57 226.5 179 66.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.9e-57 226.5 175 68.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 4.9e-57 225.7 185 61.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.4e-57 224.9 179 65.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.4e-57 224.9 179 62.6
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.4e-57 224.9 179 65.4
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.1e-56 224.6 179 62.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.4e-56 224.2 179 62.0
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.4e-56 224.2 185 61.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.4e-56 223.4 185 61.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.4e-56 223.4 180 64.4
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.2e-56 223.0 193 56.5
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.2e-56 223.0 185 61.1
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 4.2e-56 222.6 207 57.0
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 5.5e-56 222.2 179 63.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 7.1e-56 221.9 151 72.8
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.1e-56 221.9 179 65.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 7.1e-56 221.9 185 62.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 7.1e-56 221.9 177 63.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 9.3e-56 221.5 184 61.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 9.3e-56 221.5 180 64.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-55 221.1 180 59.4
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.1e-55 220.3 183 59.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.1e-55 220.3 180 62.8
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.7e-55 219.9 184 59.2
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.7e-55 219.9 182 61.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.0e-55 218.8 182 60.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 7.9e-55 218.4 181 61.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.0e-54 218.0 184 60.3
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.0e-54 218.0 179 60.9
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-54 217.6 182 60.4
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.3e-54 217.6 185 61.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.8e-54 217.2 222 53.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.3e-54 216.9 185 59.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.0e-54 216.5 177 63.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.7e-54 215.3 185 60.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.7e-54 214.9 184 59.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.1e-53 214.5 131 72.5
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.1e-53 214.5 193 57.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.1e-53 214.5 182 58.8
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.9e-53 213.8 168 63.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.9e-53 213.8 185 57.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.9e-53 213.8 189 59.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.5e-53 213.4 168 63.1
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.3e-53 213.0 186 59.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.3e-53 213.0 196 56.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.3e-53 213.0 181 61.3
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.6e-53 212.2 182 58.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.6e-53 211.5 168 62.5
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.3e-52 211.1 141 68.1
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.3e-52 211.1 159 62.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.6e-52 210.7 175 58.3
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.1e-52 210.3 180 61.1
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.8e-52 209.9 133 70.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.8e-52 209.9 150 69.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-52 209.9 139 68.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.8e-52 209.9 185 58.4
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.8e-52 209.1 183 56.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 4.8e-52 209.1 141 66.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 4.8e-52 209.1 194 54.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 4.8e-52 209.1 182 57.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 6.2e-52 208.8 183 58.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 6.2e-52 208.8 128 74.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 8.2e-52 208.4 183 57.9
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.8e-51 207.2 190 57.4
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 3.1e-51 206.5 141 66.7
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.1e-51 206.5 170 58.2
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.1e-51 206.5 182 58.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.0e-51 206.1 179 55.9
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 5.3e-51 205.7 144 67.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.3e-51 205.7 129 71.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.9e-51 205.3 223 51.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 9.0e-51 204.9 186 55.4
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.2e-50 204.5 163 64.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.5e-50 204.1 161 60.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.0e-50 203.8 196 53.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.6e-50 203.4 131 68.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-49 201.4 132 71.2
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.3e-49 201.1 186 54.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.7e-49 200.7 176 56.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.2e-49 200.3 162 59.9
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.9e-49 199.1 165 59.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.5e-49 198.7 248 46.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-48 197.6 192 54.2
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.2e-48 196.1 175 58.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 5.5e-48 195.7 189 54.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 9.3e-48 194.9 183 56.8
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 6.0e-47 192.2 115 73.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.8e-46 190.7 175 54.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.3e-46 190.3 180 54.4
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.1e-46 189.1 184 54.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.7e-46 188.3 283 40.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-45 187.6 117 70.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 3.4e-42 176.4 128 63.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.5e-42 176.0 158 58.2
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.9e-40 170.6 158 55.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 2.5e-40 170.2 118 65.3
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.6e-39 167.5 123 60.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.9e-39 165.2 124 59.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 5.1e-38 162.5 125 56.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-34 151.0 87 74.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.0e-33 148.3 131 63.4
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.7e-31 139.4 86 74.4
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-28 131.0 86 67.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.2e-28 130.6 72 80.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.4e-27 127.1 137 46.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 7.0e-27 125.6 79 65.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.5e-26 124.4 72 73.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-25 120.9 80 67.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.4e-24 117.9 65 76.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 6.1e-23 112.5 109 56.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.0e-23 112.1 130 50.8
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.4e-21 105.5 113 43.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 5.3e-19 99.4 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 5.5e-16 89.4 60 63.3
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.8e-12 76.3 83 57.8
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.8e-09 66.6 35 82.9
arahy.Tifrunner.gnm1.ann1.V4VRBH Arachis hypogaea HOM05D005677 ORTHO05D006966 6.5e-09 65.9 67 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.5e-08 63.9 58 50.0
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 2.5e-08 63.9 67 52.2
Lalb_Chr16g0388501 Lupinus albus HOM05D005677 ORTHO05D006966 6.1e-07 59.3 67 47.8
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 6.8e-06 55.8 67 47.8


User provided reference genes

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