Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 1.7e-35 152.1 76 100.0
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 1.1e-31 139.4 71 97.2
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 1.0e-24 116.3 76 78.9
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 8.6e-24 113.2 76 75.0
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 8.6e-24 113.2 76 75.0
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 3.3e-23 111.3 78 74.4
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 5.6e-23 110.5 78 73.1
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 9.5e-23 109.8 77 71.4
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 3.7e-19 97.8 76 64.5
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 4.9e-19 97.4 77 70.1
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 2.4e-18 95.1 76 65.8
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 2.4e-18 95.1 81 66.7
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 7.1e-18 93.6 74 67.6
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 3.5e-17 91.3 78 61.5
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 3.5e-17 91.3 74 64.9
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 4.6e-17 90.9 78 62.8
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 6.0e-17 90.5 75 66.7
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 6.0e-17 90.5 75 61.3
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 1.0e-16 89.7 74 64.9
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.0e-16 89.7 76 61.8
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.3e-16 89.4 77 64.9
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.3e-16 89.4 81 61.7
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.3e-16 89.4 81 61.7
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 3.0e-16 88.2 78 62.8
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 3.9e-16 87.8 78 61.5
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 5.1e-16 87.4 77 64.9
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 5.1e-16 87.4 73 61.6
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 5.1e-16 87.4 78 60.3
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 6.6e-16 87.0 73 65.8
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 6.6e-16 87.0 76 61.8
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 6.6e-16 87.0 76 60.5
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 6.6e-16 87.0 72 62.5
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 8.6e-16 86.7 74 59.5
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.9e-15 85.5 74 62.2
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.9e-15 85.5 74 62.2
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.5e-15 85.1 81 59.3
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.3e-15 84.7 74 58.1
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.3e-15 84.7 74 58.1
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.3e-15 84.7 74 62.2
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 3.3e-15 84.7 76 59.2
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 3.3e-15 84.7 78 61.5
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 4.3e-15 84.3 74 58.1
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 4.3e-15 84.3 74 56.8
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.6e-15 84.0 73 56.2
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 5.6e-15 84.0 78 61.5
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 7.3e-15 83.6 74 62.2
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 7.3e-15 83.6 74 56.8
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 7.3e-15 83.6 74 56.8
arahy.Tifrunner.gnm1.ann1.1KH3J5 Arachis hypogaea HOM05D007850 ORTHO05D009594 9.5e-15 83.2 75 62.7
arahy.Tifrunner.gnm1.ann1.THK1KM Arachis hypogaea HOM05D007850 ORTHO05D009594 9.5e-15 83.2 75 62.7
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.1e-14 82.0 74 55.4
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 2.8e-14 81.6 74 58.1
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 2.8e-14 81.6 74 56.8
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 8.1e-14 80.1 71 62.0
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 1.4e-13 79.3 76 55.3
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.8e-13 79.0 74 58.1
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 1.2e-12 76.3 77 51.9
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 1.5e-12 75.9 77 57.1
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 1.5e-12 75.9 74 59.5
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.0e-12 75.5 72 52.8
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 5.8e-12 73.9 71 54.9
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 5.8e-12 73.9 74 55.4
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 9.9e-12 73.2 73 54.8
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 9.9e-12 73.2 55 65.5
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.3e-11 72.8 73 53.4
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 1.3e-11 72.8 77 51.9
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 1.7e-11 72.4 77 51.9
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 1.7e-11 72.4 77 51.9
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 2.2e-11 72.0 55 67.3
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 6.4e-11 70.5 73 53.4
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 6.4e-11 70.5 66 59.1
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 2.4e-10 68.6 62 66.1
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 4.1e-10 67.8 68 54.4
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 7.1e-10 67.0 71 53.5
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 1.0e-08 63.2 76 47.4
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 1.0e-08 63.2 76 47.4
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-07 59.3 76 46.1
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-07 59.3 76 44.7
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 3.3e-07 58.2 76 44.7
Actinidia21359 Actinidia chinensis HOM05D007850 ORTHO05D009594 4.3e-07 57.8 83 47.0
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 4.3e-07 57.8 76 44.7
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 9.6e-07 56.6 70 47.1
Zm00001eb283490 Zea mays HOM05D058780 ORTHO05D009594 2.8e-06 55.1 57 52.6
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 4.7e-06 54.3 51 58.8


User provided reference genes

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