Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WTCC59 Arachis hypogaea HOM05D001890 ORTHO05D003442 4.8e-94 347.8 177 100.0
arahy.Tifrunner.gnm1.ann1.0N260W Arachis hypogaea HOM05D001890 ORTHO05D000566 1.5e-34 150.2 94 79.8
arahy.Tifrunner.gnm1.ann1.AQHB6D Arachis hypogaea HOM05D001890 ORTHO05D003442 2.4e-24 116.3 67 86.6
arahy.Tifrunner.gnm1.ann1.M3JRXW Arachis hypogaea HOM05D001890 ORTHO05D003442 2.4e-24 116.3 67 86.6
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 6.7e-19 98.2 61 82.0
Phvul.007G266400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 7.4e-18 94.7 67 68.7
Glyma.10G083700 Glycine max HOM05D001890 ORTHO05D003442 9.6e-18 94.4 67 70.1
Phvul.001G197400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 9.6e-18 94.4 67 65.7
VMungo0720G1360 Vigna mungo HOM05D001890 ORTHO05D003442 1.6e-17 93.6 71 66.2
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 1.6e-17 93.6 77 58.4
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 6.2e-17 91.7 67 65.7
arahy.Tifrunner.gnm1.ann1.JU9MFG Arachis hypogaea HOM05D001890 ORTHO05D003442 1.8e-16 90.1 124 46.8
QL07p026881 Quercus lobata HOM05D001890 ORTHO05D003442 9.0e-16 87.8 71 57.7
Glyma.19G201300 Glycine max HOM05D001890 ORTHO05D003442 1.2e-15 87.4 67 65.7
vmacro09092 Vaccinium macrocarpon HOM05D001890 ORTHO05D003442 1.2e-15 87.4 99 48.5
Glyma.03G203900 Glycine max HOM05D001890 ORTHO05D003442 1.5e-15 87.0 67 67.2
Psat6g097960 Pisum sativum HOM05D001890 ORTHO05D003442 2.0e-15 86.7 67 62.7
Lalb_Chr01g0017781 Lupinus albus HOM05D001890 ORTHO05D003442 3.4e-15 85.9 71 59.2
Cfa020085 Carpinus fangiana HOM05D001890 ORTHO05D003442 4.5e-15 85.5 71 63.4
Sed0008069 Sechium edule HOM05D001890 ORTHO05D003442 4.5e-15 85.5 78 57.7
Glyma.02G193200 Glycine max HOM05D001890 ORTHO05D003442 5.8e-15 85.1 66 62.1
Medtr1g055315 Medicago truncatula HOM05D001890 ORTHO05D003442 5.8e-15 85.1 67 64.2
CiPaw.10G019600 Carya illinoinensis HOM05D001890 ORTHO05D003442 7.6e-15 84.7 71 57.7
Psat3g028200 Pisum sativum HOM05D001890 ORTHO05D003442 1.0e-14 84.3 71 60.6
Sed0014759 Sechium edule HOM05D001890 ORTHO05D003442 1.3e-14 84.0 71 60.6
CANSAT64G0653 Cannabis sativa HOM05D001890 ORTHO05D003442 2.2e-14 83.2 71 60.6
Medtr7g106640 Medicago truncatula HOM05D001890 ORTHO05D003442 2.9e-14 82.8 71 59.2
CSS0016780 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D003442 5.0e-14 82.0 71 56.3
Cpa.g.sc104.3 Carica papaya HOM05D001890 ORTHO05D003442 5.0e-14 82.0 67 59.7
Ca_11670_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 5.0e-14 82.0 68 55.9
Migut.J00744 Erythranthe guttata HOM05D001890 ORTHO05D003442 5.0e-14 82.0 71 59.2
Eucgr.A02559 Eucalyptus grandis HOM05D001890 ORTHO05D003442 5.0e-14 82.0 71 56.3
MSTRG.5917 Avicennia marina HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 56.3
Ca_09069_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 8.4e-14 81.3 67 62.7
Gohir.A09G132700 Gossypium hirsutum HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 57.7
Gohir.D09G129000 Gossypium hirsutum HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 57.7
Gorai.006G147700 Gossypium raimondii HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 57.7
Manes.09G043100 Manihot esculenta HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 57.7
SalBow5G5266 Salvia bowleyana HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 54.9
Thecc.05G108400 Theobroma cacao HOM05D001890 ORTHO05D003442 8.4e-14 81.3 71 57.7
Cc01_g02980 Coffea canephora HOM05D001890 ORTHO05D003442 1.1e-13 80.9 73 58.9
Hma1.2p1_0969F.1_g242598 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 1.1e-13 80.9 71 54.9
Hma1.2p1_2851F.1_g329440 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 1.1e-13 80.9 71 54.9
Oeu020167.1 Olea europaea HOM05D001890 ORTHO05D003442 1.1e-13 80.9 71 57.7
CsaV3_3G038170 Cucumis sativus L. HOM05D001890 ORTHO05D003442 1.4e-13 80.5 71 59.2
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.4e-13 80.5 71 54.9
Lj1g0026398 Lotus japonicus HOM05D001890 ORTHO05D003442 1.4e-13 80.5 71 57.7
CiPaw.09G022800 Carya illinoinensis HOM05D001890 ORTHO05D003442 1.9e-13 80.1 71 57.7
Cc01_g03030 Coffea canephora HOM05D001890 ORTHO05D003442 1.9e-13 80.1 71 59.2
Lalb_Chr20g0111261 Lupinus albus HOM05D001890 ORTHO05D003442 1.9e-13 80.1 67 55.2
TPR.G25807 Trifolium pratense HOM05D001890 ORTHO05D003442 1.9e-13 80.1 73 54.8
arahy.Tifrunner.gnm1.ann1.3V0CBS Arachis hypogaea HOM05D001890 ORTHO05D003442 2.5e-13 79.7 67 61.2
Ciclev10011250m.g Citrus clementina HOM05D001890 ORTHO05D003442 2.5e-13 79.7 67 58.2
Manes.08G036000 Manihot esculenta HOM05D001890 ORTHO05D003442 2.5e-13 79.7 71 57.7
Duzib128G1367 Durio zibethinus HOM05D001890 ORTHO05D003442 3.2e-13 79.3 71 56.3
Sc07g0006350 Simmondsia chinensis HOM05D001890 ORTHO05D003442 5.5e-13 78.6 71 54.9
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 7.2e-13 78.2 69 58.0
COL.COLO4_29518 Corchorus olitorius HOM05D001890 ORTHO05D003442 7.2e-13 78.2 71 56.3
Rhsim02G0181100 Rhododendron simsii HOM05D001890 ORTHO05D003442 7.2e-13 78.2 71 56.3
Sed0025654 Sechium edule HOM05D001890 ORTHO05D003442 7.2e-13 78.2 71 56.3
TAR623G0995 Trochodendron aralioides HOM05D001890 ORTHO05D003442 7.2e-13 78.2 71 54.9
Duzib093G1618 Durio zibethinus HOM05D001890 ORTHO05D003442 9.3e-13 77.8 72 56.9
Thhalv10013326m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 9.3e-13 77.8 67 61.2
RcHm_v2.0_Chr3g0476671 Rosa chinensis HOM05D001890 ORTHO05D003442 9.3e-13 77.8 64 60.9
BraA03t09636Z Brassica rapa HOM05D001890 ORTHO05D003442 1.2e-12 77.4 69 55.1
ClCG10G018130 Citrullus lanatus HOM05D001890 ORTHO05D003442 1.2e-12 77.4 71 54.9
THA.LOC104826799 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 1.2e-12 77.4 67 55.2
Haze_20107 Corylus avellana HOM05D001890 ORTHO05D003442 1.6e-12 77.0 87 51.7
Migut.L01851 Erythranthe guttata HOM05D001890 ORTHO05D003442 2.1e-12 76.6 71 54.9
TWI77G0744 Tripterygium wilfordii HOM05D001890 ORTHO05D003442 2.1e-12 76.6 71 54.9
Gohir.D01G122600 Gossypium hirsutum HOM05D001890 ORTHO05D003442 2.7e-12 76.3 71 53.5
Gorai.002G153500 Gossypium raimondii HOM05D001890 ORTHO05D003442 2.7e-12 76.3 71 53.5
Prupe.7G091200 Prunus persica HOM05D001890 ORTHO05D003442 2.7e-12 76.3 66 59.1
AL6G16530 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 3.5e-12 75.9 64 62.5
AT5G06440 Arabidopsis thaliana HOM05D001890 ORTHO05D003442 3.5e-12 75.9 64 60.9
FvH4_6g20770 Fragaria vesca HOM05D001890 ORTHO05D003442 4.6e-12 75.5 68 57.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.6e-12 75.5 68 57.4
Lj1A1058T56 Lonicera japonica HOM05D001890 ORTHO05D003442 4.6e-12 75.5 71 50.7
TAR369G0675 Trochodendron aralioides HOM05D001890 ORTHO05D003442 4.6e-12 75.5 71 54.9
Actinidia06190 Actinidia chinensis HOM05D001890 ORTHO05D003442 6.1e-12 75.1 71 52.1
Aqoxy1G00604 Aquilegia oxysepala HOM05D001890 ORTHO05D003442 6.1e-12 75.1 67 55.2
FAN05G0175 Fragaria x ananassa HOM05D001890 ORTHO05D003442 6.1e-12 75.1 68 55.9
FAN05G0573 Fragaria x ananassa HOM05D001890 ORTHO05D003442 6.1e-12 75.1 68 55.9
Carub.0006s0532 Capsella rubella HOM05D001890 ORTHO05D003442 7.9e-12 74.7 64 60.9
GSVIVG01022534001 Vitis vinifera HOM05D001890 ORTHO05D003442 7.9e-12 74.7 71 52.1
Actinidia07949 Actinidia chinensis HOM05D001890 ORTHO05D003442 1.0e-11 74.3 71 52.1
BcaC06g32374 Brassica carinata HOM05D001890 ORTHO05D003442 1.0e-11 74.3 67 61.2
C09p70360 Brassica napus HOM05D001890 ORTHO05D003442 1.0e-11 74.3 67 61.2
BolC9t59781H Brassica oleracea HOM05D001890 ORTHO05D003442 1.0e-11 74.3 67 61.2
A10p29950 Brassica napus HOM05D001890 ORTHO05D003442 1.3e-11 73.9 67 61.2
BraA10t45034Z Brassica rapa HOM05D001890 ORTHO05D003442 1.3e-11 73.9 67 61.2
MD14G1042900 Malus domestica HOM05D001890 ORTHO05D003442 1.8e-11 73.6 66 56.1
THA.LOC104816629 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 1.8e-11 73.6 69 55.1
A03p02730 Brassica napus HOM05D001890 ORTHO05D003442 2.3e-11 73.2 70 55.7
SHI28306 Sapria himalayana HOM05D001890 ORTHO05D003442 2.3e-11 73.2 69 50.7
PGSC0003DMG400021336 Solanum tuberosum HOM05D001890 ORTHO05D003442 2.3e-11 73.2 71 52.1
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 3.0e-11 72.8 73 56.2
Hund10836 Selenicereus undatus HOM05D001890 ORTHO05D003442 3.0e-11 72.8 71 59.2
CARHR206750 Cardamine hirsuta HOM05D001890 ORTHO05D003442 3.9e-11 72.4 64 59.4
AUR62030696 Chenopodium quinoa HOM05D001890 ORTHO05D003442 3.9e-11 72.4 71 52.1
Gohir.A01G135400 Gossypium hirsutum HOM05D001890 ORTHO05D003442 3.9e-11 72.4 71 50.7
Potri.006G201000 Populus trichocarpa HOM05D001890 ORTHO05D003442 3.9e-11 72.4 67 52.2
Potri.016G067000 Populus trichocarpa HOM05D001890 ORTHO05D003442 3.9e-11 72.4 71 52.1
Aa31LG3G5200 Aethionema arabicum HOM05D001890 ORTHO05D003442 5.1e-11 72.0 64 54.7
CAN.G911.29 Capsicum annuum HOM05D001890 ORTHO05D003442 5.1e-11 72.0 71 52.1
Lj5g0000561 Lotus japonicus HOM05D001890 ORTHO05D003442 5.1e-11 72.0 67 53.7
Sabra16G0068300 Salix brachista HOM05D001890 ORTHO05D003442 5.1e-11 72.0 71 52.1
Solyc01g006870.4 Solanum lycopersicum HOM05D001890 ORTHO05D003442 5.1e-11 72.0 71 52.1
Sopen01g002860 Solanum pennellii HOM05D001890 ORTHO05D003442 5.1e-11 72.0 71 52.1
MD12G1043900 Malus domestica HOM05D001890 ORTHO05D003442 6.7e-11 71.6 70 52.9
Solyc10g081770.3 Solanum lycopersicum HOM05D001890 ORTHO05D003442 6.7e-11 71.6 70 48.6
ECA233G4742 Erigeron canadensis HOM05D001890 ORTHO05D003442 8.7e-11 71.2 67 53.7
Peaxi162Scf00675g00056 Petunia axillaris HOM05D001890 ORTHO05D003442 8.7e-11 71.2 77 49.4
Sp6g36420 Schrenkiella parvula HOM05D001890 ORTHO05D003442 1.1e-10 70.9 71 54.9
arahy.Tifrunner.gnm1.ann1.M9SKFA Arachis hypogaea HOM05D001890 ORTHO05D003442 1.9e-10 70.1 63 60.3
PSO339G5959 Papaver somniferum HOM05D001890 ORTHO05D003442 1.9e-10 70.1 71 47.9
PGSC0003DMG400028231 Solanum tuberosum HOM05D001890 ORTHO05D003442 1.9e-10 70.1 71 47.9
Aa31sc52G250 Aethionema arabicum HOM05D001890 ORTHO05D003442 2.5e-10 69.7 64 56.2
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 3.3e-10 69.3 40 85.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.3e-10 69.3 73 54.8
CAN.G674.15 Capsicum annuum HOM05D001890 ORTHO05D003442 3.3e-10 69.3 71 46.5
PSO384G4950 Papaver somniferum HOM05D001890 ORTHO05D003442 3.3e-10 69.3 71 47.9
Peaxi162Scf00203g00101 Petunia axillaris HOM05D001890 ORTHO05D003442 3.3e-10 69.3 71 47.9
EL10Ac5g11825 Beta vulgaris HOM05D001890 ORTHO05D003442 5.7e-10 68.6 71 52.1
Os11g0568700 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D003442 5.7e-10 68.6 67 47.8
PGR004G2025 Punica granatum HOM05D001890 ORTHO05D003442 5.7e-10 68.6 71 47.9
Sopen10g032280 Solanum pennellii HOM05D001890 ORTHO05D003442 5.7e-10 68.6 71 46.5
HPP92_005860 Vanilla planifolia HOM05D001890 ORTHO05D003442 7.4e-10 68.2 66 50.0
Nn2g14393 Nelumbo nucifera HOM05D001890 ORTHO05D003442 9.7e-10 67.8 71 47.9
CDE04G0663 Ceratophyllum demersum HOM05D001890 ORTHO05D003442 1.3e-09 67.4 67 49.3
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 2.2e-09 66.6 71 49.3
BcaC06g32575 Brassica carinata HOM05D001890 ORTHO05D003442 2.2e-09 66.6 67 55.2
Lsat_1_v5_gn_6_34701 Lactuca sativa HOM05D001890 ORTHO05D003442 2.8e-09 66.2 71 45.1
Nitab4.5_0005218g0020 Nicotiana tabacum HOM05D001890 ORTHO05D003442 2.8e-09 66.2 81 46.9
HanXRQChr02g0053331 Helianthus annuus HOM05D001890 ORTHO05D003442 4.8e-09 65.5 67 46.3
C05p56160 Brassica napus HOM05D001890 ORTHO05D003442 8.2e-09 64.7 63 50.8
BolC5t34281H Brassica oleracea HOM05D001890 ORTHO05D003442 8.2e-09 64.7 63 50.8
Nn6g34599 Nelumbo nucifera HOM05D001890 ORTHO05D003442 8.2e-09 64.7 71 45.1
SGA_v2.0_scaffold392G50676 Striga asiatica HOM05D001890 ORTHO05D003442 8.2e-09 64.7 63 54.0
AUR62036337 Chenopodium quinoa HOM05D001890 ORTHO05D003442 1.4e-08 63.9 65 49.2
Cc06_g06840 Coffea canephora HOM05D001890 ORTHO05D003442 1.4e-08 63.9 67 55.2
BcaB06g25587 Brassica carinata HOM05D001890 ORTHO05D003442 2.4e-08 63.2 63 49.2
Medtr2g066850 Medicago truncatula HOM05D002807 ORTHO05D018033 2.4e-08 63.2 59 55.9
PGR083G0563 Punica granatum HOM05D000218 ORTHO05D000125 2.4e-08 63.2 66 47.0
Thhalv10020420m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 3.1e-08 62.8 63 50.8
PSO063G3472 Papaver somniferum HOM05D001890 ORTHO05D003442 3.1e-08 62.8 71 45.1
Sp3g09950 Schrenkiella parvula HOM05D001890 ORTHO05D003442 4.1e-08 62.4 63 49.2
MBI11_g01309_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D003442 5.3e-08 62.0 67 44.8
Atru.chr8.1302 Acer truncatum HOM05D001890 ORTHO05D003442 6.9e-08 61.6 51 64.7
ATR0697G280 Amborella trichopoda HOM05D001890 ORTHO05D003442 9.0e-08 61.2 71 46.5
A03p37250 Brassica napus HOM05D001890 ORTHO05D003442 9.0e-08 61.2 63 50.8
BraA05t22558Z Brassica rapa HOM05D001890 ORTHO05D003442 9.0e-08 61.2 63 47.6
HanXRQChr13g0398661 Helianthus annuus HOM05D001890 ORTHO05D003442 9.0e-08 61.2 71 43.7
AL3G23280 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 1.5e-07 60.5 63 52.4
AT3G11720 Arabidopsis thaliana HOM05D001890 ORTHO05D003442 1.5e-07 60.5 66 48.5
A05p37600 Brassica napus HOM05D001890 ORTHO05D003442 1.5e-07 60.5 63 47.6
PSO339G0680 Papaver somniferum HOM05D001890 ORTHO05D003442 1.5e-07 60.5 88 37.5
BcaC05g29335 Brassica carinata HOM05D001890 ORTHO05D003442 2.0e-07 60.1 63 46.0
BcaC01g04089 Brassica carinata HOM05D001890 ORTHO05D003442 2.6e-07 59.7 63 49.2
PSO384G0895 Papaver somniferum HOM05D001890 ORTHO05D003442 2.6e-07 59.7 88 36.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.4e-07 59.3 50 64.0
MELO3C009560.2 Cucumis melo HOM05D001890 ORTHO05D003442 3.4e-07 59.3 54 61.1
BraA03t12885Z Brassica rapa HOM05D001890 ORTHO05D003442 4.5e-07 58.9 63 49.2
C03p45110 Brassica napus HOM05D001890 ORTHO05D003442 7.7e-07 58.2 63 49.2
BolC3t16775H Brassica oleracea HOM05D001890 ORTHO05D003442 7.7e-07 58.2 63 49.2
CARHR086270 Cardamine hirsuta HOM05D001890 ORTHO05D003442 1.0e-06 57.8 63 52.4
Carub.0003s1106 Capsella rubella HOM05D001890 ORTHO05D003442 1.7e-06 57.0 65 49.2
BcaB04g18657 Brassica carinata HOM05D001890 ORTHO05D003442 2.2e-06 56.6 63 47.6
Sabra06G0154700 Salix brachista HOM05D001890 ORTHO05D003442 6.5e-06 55.1 52 51.9


User provided reference genes

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