Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WT9NK0 Arachis hypogaea HOM05D002466 ORTHO05D002668 1.9e-47 192.2 98 100.0
arahy.Tifrunner.gnm1.ann1.0GJ727 Arachis hypogaea HOM05D002466 ORTHO05D002668 5.3e-18 94.4 52 90.4
arahy.Tifrunner.gnm1.ann1.CP70Z4 Arachis hypogaea HOM05D002466 ORTHO05D002668 2.6e-17 92.0 52 88.5
Psat3g082920 Pisum sativum HOM05D002466 ORTHO05D002668 5.2e-13 77.8 50 76.0
arahy.Tifrunner.gnm1.ann1.UE90AA Arachis hypogaea HOM05D002466 ORTHO05D002668 2.6e-12 75.5 56 75.0
Glyma.03G119200 Glycine max HOM05D002466 ORTHO05D002668 3.4e-12 75.1 49 71.4
Glyma.19G123500 Glycine max HOM05D002466 ORTHO05D002668 4.4e-12 74.7 49 73.5
Phvul.001G108900 Phaseolus vulgaris HOM05D002466 ORTHO05D002668 5.7e-12 74.3 50 72.0
VMungo1383G1240 Vigna mungo HOM05D002466 ORTHO05D002668 5.7e-12 74.3 50 72.0
Lalb_Chr14g0365111 Lupinus albus HOM05D002466 ORTHO05D002668 4.8e-11 71.2 49 65.3
Psat1g087280 Pisum sativum HOM05D002466 ORTHO05D002668 6.3e-11 70.9 49 69.4
Lj1g0021177 Lotus japonicus HOM05D002466 ORTHO05D002668 1.1e-10 70.1 50 68.0
Medtr7g088220 Medicago truncatula HOM05D002466 ORTHO05D002668 1.4e-10 69.7 47 70.2
Lj2g0018509 Lotus japonicus HOM05D002466 ORTHO05D002668 1.2e-09 66.6 46 69.6
Medtr6g026870 Medicago truncatula HOM05D002466 ORTHO05D002668 1.2e-09 66.6 49 67.3
Ca_04450_v3 Cicer arietinum L. HOM05D002466 ORTHO05D002668 2.7e-09 65.5 52 61.5
Thecc.05G127900 Theobroma cacao HOM05D002466 ORTHO05D002668 1.0e-08 63.5 49 59.2
Lalb_Chr06g0174231 Lupinus albus HOM05D002466 ORTHO05D002668 1.3e-08 63.2 52 55.8
Sabra16G0022300 Salix brachista HOM05D002466 ORTHO05D002668 1.7e-08 62.8 49 61.2
Sabra16G0029800 Salix brachista HOM05D002466 ORTHO05D002668 1.7e-08 62.8 49 61.2
Eucgr.A02167 Eucalyptus grandis HOM05D002466 ORTHO05D002668 2.2e-08 62.4 49 57.1
PSO384G3696 Papaver somniferum HOM05D002466 ORTHO05D002668 2.2e-08 62.4 49 59.2
Nitab4.5_0006904g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.9e-08 62.0 51 58.8
AagrBONN_evm.TU.Sc2ySwM_228.605 Anthoceros agrestis HOM05D002466 ORTHO05D002668 3.8e-08 61.6 49 53.1
CiPaw.09G052500 Carya illinoinensis HOM05D002466 ORTHO05D002668 3.8e-08 61.6 47 57.4
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 3.8e-08 61.6 45 66.7
MSTRG.19742 Avicennia marina HOM05D002466 ORTHO05D002668 5.0e-08 61.2 49 57.1
Sp4g23380 Schrenkiella parvula HOM05D002466 ORTHO05D002668 5.0e-08 61.2 52 57.7
Thecc.05G128200 Theobroma cacao HOM05D002466 ORTHO05D002668 5.0e-08 61.2 49 59.2
GSVIVG01025862001 Vitis vinifera HOM05D002466 ORTHO05D002668 5.0e-08 61.2 49 59.2
Hma1.2p1_0203F.1_g086770 Hydrangea macrophylla HOM05D002466 ORTHO05D002668 6.5e-08 60.8 47 59.6
Lj2A414G27 Lonicera japonica HOM05D002466 ORTHO05D002668 6.5e-08 60.8 49 55.1
PSO339G3570 Papaver somniferum HOM05D002466 ORTHO05D002668 6.5e-08 60.8 48 58.3
AL4G39020 Arabidopsis lyrata HOM05D002466 ORTHO05D002668 8.5e-08 60.5 52 57.7
AT2G41050 Arabidopsis thaliana HOM05D002466 ORTHO05D002668 8.5e-08 60.5 52 55.8
CSS0009682 Camellia sinensis var. sinensis HOM05D002466 ORTHO05D002668 8.5e-08 60.5 47 59.6
ClCG10G016780 Citrullus lanatus HOM05D002466 ORTHO05D002668 1.1e-07 60.1 49 59.2
COL.COLO4_08086 Corchorus olitorius HOM05D002466 ORTHO05D002668 1.1e-07 60.1 49 57.1
MD12G1015700 Malus domestica HOM05D002466 ORTHO05D002668 1.1e-07 60.1 49 57.1
Aqoxy1G00004 Aquilegia oxysepala HOM05D002466 ORTHO05D002668 1.5e-07 59.7 49 53.1
Carub.0004s2337 Capsella rubella HOM05D002466 ORTHO05D002668 1.5e-07 59.7 52 55.8
Eucgr.A02168 Eucalyptus grandis HOM05D002466 ORTHO05D002668 1.5e-07 59.7 49 57.1
TPR.G23665 Trifolium pratense HOM05D002466 ORTHO05D002668 1.5e-07 59.7 44 61.4
EL10Ac5g11613 Beta vulgaris HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 57.1
A05p02010 Brassica napus HOM05D002466 ORTHO05D002668 1.9e-07 59.3 52 57.7
C04p02390 Brassica napus HOM05D002466 ORTHO05D002668 1.9e-07 59.3 52 57.7
BraA05t19197Z Brassica rapa HOM05D002466 ORTHO05D002668 1.9e-07 59.3 52 57.7
CARHR136160 Cardamine hirsuta HOM05D002466 ORTHO05D002668 1.9e-07 59.3 52 55.8
Gohir.A09G118200 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 59.2
Gohir.D09G115100 Gossypium hirsutum HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 59.2
Gorai.006G132700 Gossypium raimondii HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 59.2
Os01g0266800 Oryza sativa ssp. japonica HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 55.1
Potri.016G023400 Populus trichocarpa HOM05D002466 ORTHO05D002668 1.9e-07 59.3 49 59.2
HPP92_021169 Vanilla planifolia HOM05D002466 ORTHO05D002668 2.5e-07 58.9 50 58.0
BcaC02g12746 Brassica carinata HOM05D002466 ORTHO05D002668 3.2e-07 58.5 52 57.7
Migut.J01599 Erythranthe guttata HOM05D002466 ORTHO05D002668 3.2e-07 58.5 49 55.1
RcHm_v2.0_Chr3g0495241 Rosa chinensis HOM05D002466 ORTHO05D002668 3.2e-07 58.5 49 53.1
Sabra06G0018400 Salix brachista HOM05D002466 ORTHO05D000276 3.2e-07 58.5 47 55.3
CARHR226940 Cardamine hirsuta HOM05D002466 ORTHO05D002668 4.2e-07 58.2 47 53.2
CsaV3_3G039570 Cucumis sativus L. HOM05D002466 ORTHO05D002668 4.2e-07 58.2 48 56.2
MBI19_g28104_MAGBIO Magnolia biondii HOM05D002466 ORTHO05D002668 4.2e-07 58.2 49 55.1
Oeu062542.1 Olea europaea HOM05D002466 ORTHO05D002668 4.2e-07 58.2 49 51.0
Thecc.05G128100 Theobroma cacao HOM05D002466 ORTHO05D002668 4.2e-07 58.2 47 55.3
BolC4t21885H Brassica oleracea HOM05D002466 ORTHO05D002668 5.5e-07 57.8 52 55.8
Cpa.g.sc33.187 Carica papaya HOM05D002466 ORTHO05D002668 5.5e-07 57.8 49 53.1
Duzib093G0232 Durio zibethinus HOM05D002466 ORTHO05D002668 5.5e-07 57.8 49 57.1
Prupe.7G024800 Prunus persica HOM05D002466 ORTHO05D002668 5.5e-07 57.8 49 53.1
Aa31LG3G1000 Aethionema arabicum HOM05D002466 ORTHO05D002668 7.2e-07 57.4 49 57.1
Dinv37051 Davidia involucrata HOM05D002466 ORTHO05D002668 7.2e-07 57.4 49 53.1
HanXRQChr04g0125511 Helianthus annuus HOM05D002466 ORTHO05D002668 7.2e-07 57.4 47 53.2
Nn7g37299 Nelumbo nucifera HOM05D002466 ORTHO05D002668 7.2e-07 57.4 49 55.1
RhsimUnG0022200 Rhododendron simsii HOM05D002466 ORTHO05D002668 7.2e-07 57.4 47 55.3
Sc07g0007920 Simmondsia chinensis HOM05D002466 ORTHO05D002668 7.2e-07 57.4 49 51.0
vmacro07604 Vaccinium macrocarpon HOM05D002466 ORTHO05D002668 7.2e-07 57.4 47 55.3
MELO3C009698.2 Cucumis melo HOM05D002466 ORTHO05D002668 1.2e-06 56.6 47 57.4
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.2e-06 56.6 49 53.1
SGA_v2.0_scaffold66G22351 Striga asiatica HOM05D002466 ORTHO05D002668 1.2e-06 56.6 47 53.2
unitig_85.g27230 Utricularia gibba HOM05D002466 ORTHO05D002668 1.2e-06 56.6 49 49.0
Zm00001eb333170 Zea mays HOM05D002466 ORTHO05D002668 1.2e-06 56.6 49 51.0
PGR042G2977 Punica granatum HOM05D002466 ORTHO05D002668 1.6e-06 56.2 49 51.0
Zm00001eb128150 Zea mays HOM05D002466 ORTHO05D002668 1.6e-06 56.2 49 53.1
AT4G20100 Arabidopsis thaliana HOM05D002466 ORTHO05D002668 2.1e-06 55.8 47 53.2
Lalb_Chr05g0227491 Lupinus albus HOM05D002466 ORTHO05D002668 2.1e-06 55.8 49 51.0
SMO271G0104 Selaginella moellendorffii HOM05D002466 ORTHO05D002668 2.1e-06 55.8 47 51.1
Ah.12g062250 Amaranthus hybridus HOM05D002466 ORTHO05D002668 2.7e-06 55.5 49 49.0
Sed0024353 Sechium edule HOM05D002466 ORTHO05D002668 2.7e-06 55.5 49 51.0
THA.LOC104803245 Tarenaya hassleriana HOM05D002466 ORTHO05D002668 2.7e-06 55.5 49 55.1
AL7G33720 Arabidopsis lyrata HOM05D002466 ORTHO05D002668 3.6e-06 55.1 47 51.1
Carub.0007s2102 Capsella rubella HOM05D002466 ORTHO05D002668 3.6e-06 55.1 47 53.2
CDE04G3136 Ceratophyllum demersum HOM05D002466 ORTHO05D002668 3.6e-06 55.1 47 51.1
ECA236G0850 Erigeron canadensis HOM05D002466 ORTHO05D002668 3.6e-06 55.1 47 51.1
Pp3c20_8770 Physcomitrium patens HOM05D002466 ORTHO05D002668 3.6e-06 55.1 49 51.0
Pp3c8_22100 Physcomitrium patens HOM05D002466 ORTHO05D002668 3.6e-06 55.1 49 49.0
Actinidia37848 Actinidia chinensis HOM05D002466 ORTHO05D002668 4.7e-06 54.7 47 53.2
Ciclev10011933m.g Citrus clementina HOM05D002466 ORTHO05D002668 4.7e-06 54.7 49 53.1
Dinv36037 Davidia involucrata HOM05D002466 ORTHO05D002668 4.7e-06 54.7 47 48.9
Dinv39376 Davidia involucrata HOM05D002466 ORTHO05D002668 4.7e-06 54.7 47 51.1
TWI09G0566 Tripterygium wilfordii HOM05D002466 ORTHO05D002668 6.1e-06 54.3 49 46.9
ATR0307G008 Amborella trichopoda HOM05D002466 ORTHO05D002668 8.0e-06 53.9 47 51.1
Dinv14551 Davidia involucrata HOM05D002466 ORTHO05D002668 8.0e-06 53.9 49 44.9
Migut.C00679 Erythranthe guttata HOM05D002466 ORTHO05D002668 8.0e-06 53.9 47 48.9
SEGI_07405 Sequoiadendron giganteum HOM05D002466 ORTHO05D002668 8.0e-06 53.9 48 47.9


User provided reference genes

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