Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.3e-185 652.1 334 100.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 5.8e-141 504.6 308 87.0
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.0e-81 307.8 279 62.4
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.8e-81 307.0 266 63.5
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.8e-78 297.0 262 61.5
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.0e-76 291.2 261 59.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 3.9e-76 289.3 266 61.3
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.5e-75 287.3 270 59.3
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 4.7e-74 282.3 264 58.0
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 6.8e-73 278.5 225 65.8
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.4e-70 270.0 276 55.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 9.8e-64 248.1 275 49.8
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 2.2e-63 246.9 277 50.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 3.7e-63 246.1 237 53.6
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 7.1e-62 241.9 275 48.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.6e-61 240.7 271 51.7
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.5e-59 234.2 258 48.1
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.6e-58 229.6 232 49.6
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 6.2e-58 228.8 232 48.7
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 5.2e-57 225.7 270 46.7
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 9.2e-54 214.9 247 46.2
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 9.2e-54 214.9 287 43.2
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.2e-53 214.5 258 45.3
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.6e-53 214.2 284 42.6
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.1e-53 213.8 270 43.7
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 7.8e-53 211.8 198 55.6
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.1e-51 208.0 285 42.8
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.2e-50 204.5 292 42.1
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 2.1e-50 203.8 259 43.2
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 3.6e-50 203.0 204 52.5
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 6.2e-50 202.2 220 49.1
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.1e-49 201.4 275 42.2
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.4e-49 201.1 238 45.4
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.4e-49 200.3 268 43.7
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 4.0e-49 199.5 252 44.0
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 5.2e-49 199.1 268 43.3
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 6.9e-49 198.7 291 40.9
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 8.9e-49 198.4 289 45.3
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.5e-48 197.6 269 41.6
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 2.6e-48 196.8 235 43.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 4.4e-48 196.1 227 47.6
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 5.8e-48 195.7 269 41.3
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 7.6e-48 195.3 354 35.3
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 7.6e-48 195.3 284 40.5
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.3e-47 194.5 258 42.2
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 2.9e-47 193.4 258 42.2
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 3.8e-47 193.0 239 43.5
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 4.9e-47 192.6 244 41.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 8.4e-47 191.8 239 43.1
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 1.1e-46 191.4 227 42.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 1.9e-46 190.7 280 41.1
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.4e-46 190.3 277 39.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 5.4e-46 189.1 268 41.0
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 7.1e-46 188.7 268 41.4
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 1.6e-45 187.6 229 41.9
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.1e-45 187.2 272 40.8
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 2.1e-45 187.2 261 41.8
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 6.0e-45 185.7 262 42.7
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 7.8e-45 185.3 232 41.4
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.0e-44 184.9 259 42.9
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.3e-44 184.5 229 41.0
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.7e-44 184.1 257 39.7
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.7e-44 184.1 232 40.5
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 2.3e-44 183.7 287 38.7
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 8.7e-44 181.8 227 41.4
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 5.6e-43 179.1 227 41.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 9.6e-43 178.3 225 41.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 3.6e-42 176.4 265 38.9
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.4e-41 174.5 264 38.6
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.4e-41 174.5 264 38.6
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 9.0e-41 171.8 226 40.3
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 9.0e-41 171.8 225 41.3
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.0e-41 171.8 286 38.8
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 2.0e-40 170.6 266 39.8
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 9.9e-40 168.3 284 37.0
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 6.4e-39 165.6 225 42.2
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 8.4e-39 165.2 222 41.9
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.4e-38 163.7 199 43.7
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 6.0e-37 159.1 243 38.7
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.0e-36 156.8 198 42.4
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 3.9e-36 156.4 198 42.4
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.9e-35 154.1 198 41.4
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.6e-34 151.0 158 47.5
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 6.9e-33 145.6 193 40.4
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.6e-32 143.7 264 35.6
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.6e-32 143.7 192 44.3
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 7.6e-32 142.1 278 34.2
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 1.3e-31 141.4 262 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 1.7e-31 141.0 197 42.6
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 2.4e-30 137.1 173 42.8
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 3.2e-30 136.7 141 50.4
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.6e-29 132.9 222 35.1
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 6.0e-29 132.5 92 67.4
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 2.3e-28 130.6 356 28.9
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.6e-26 124.4 169 39.6
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.7e-26 123.2 157 43.3
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.3e-23 114.8 229 33.2
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.3e-20 104.8 227 30.4
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 5.7e-19 99.4 160 39.4
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 3.6e-13 80.1 213 25.8
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.5e-11 74.7 113 38.1
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.9e-11 74.3 108 41.7
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.3e-10 71.6 113 37.2
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 3.7e-10 70.1 257 27.2
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 3.7e-10 70.1 130 39.2
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 4.8e-10 69.7 248 26.2
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 8.2e-10 68.9 264 26.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 8.2e-10 68.9 211 26.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 8.2e-10 68.9 216 25.0
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 1.1e-09 68.6 112 42.0
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.4e-09 68.2 243 26.3
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.8e-09 67.8 254 26.0
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 1.8e-09 67.8 129 36.4
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.8e-09 67.8 129 36.4
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 4.1e-09 66.6 82 40.2
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 6.9e-09 65.9 242 24.4
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 6.9e-09 65.9 270 24.4
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 6.9e-09 65.9 211 23.7
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 9.1e-09 65.5 246 24.0
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 2.0e-08 64.3 256 24.6
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 2.6e-08 63.9 243 24.7
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 3.4e-08 63.5 239 23.4
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.5e-08 63.2 210 24.8
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 5.9e-08 62.8 212 23.1
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 5.9e-08 62.8 211 23.7
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 7.7e-08 62.4 129 37.2
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 7.7e-08 62.4 252 26.2
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 1.0e-07 62.0 212 23.1
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.0e-07 62.0 251 24.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.7e-07 61.2 212 23.1
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 3.8e-07 60.1 212 22.6
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 3.8e-07 60.1 129 40.3
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 3.8e-07 60.1 114 38.6
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 3.8e-07 60.1 258 23.3
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 5.0e-07 59.7 247 25.1
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 5.0e-07 59.7 256 23.4
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.1e-06 58.5 253 24.1
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.4e-06 58.2 257 22.6
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.9e-06 57.8 254 23.2
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 3.2e-06 57.0 129 36.4
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.5e-06 56.2 262 23.7
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 9.4e-06 55.5 270 24.4


User provided reference genes

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