Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WPHY5E Arachis hypogaea HOM05D003427 ORTHO05D003927 9.6e-65 250.0 124 100.0
arahy.Tifrunner.gnm1.ann1.1IHI4J Arachis hypogaea HOM05D003427 ORTHO05D003927 3.7e-64 248.1 124 98.4
arahy.Tifrunner.gnm1.ann1.R476QE Arachis hypogaea HOM05D003427 ORTHO05D003927 3.7e-64 248.1 124 98.4
arahy.Tifrunner.gnm1.ann1.T4K93Z Arachis hypogaea HOM05D003427 ORTHO05D003927 8.1e-64 246.9 124 98.4
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 2.9e-61 238.4 124 96.0
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 3.2e-60 235.0 124 95.2
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 6.7e-50 200.7 120 78.3
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 2.8e-48 195.3 118 79.7
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 4.8e-48 194.5 121 76.0
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 8.2e-48 193.7 119 78.2
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 1.8e-47 192.6 119 77.3
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 1.8e-47 192.6 124 74.2
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.8e-47 192.6 124 74.2
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 4.1e-47 191.4 124 76.6
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 4.1e-47 191.4 118 76.3
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 9.0e-47 190.3 124 72.6
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 1.2e-46 189.9 124 74.2
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 1.5e-46 189.5 119 75.6
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 2.0e-46 189.1 119 75.6
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 5.9e-46 187.6 119 76.5
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 5.9e-46 187.6 119 77.3
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 1.0e-45 186.8 120 75.0
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 1.7e-45 186.0 120 75.0
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.7e-45 186.0 120 74.2
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.7e-45 186.0 120 74.2
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 5.0e-45 184.5 120 73.3
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 5.0e-45 184.5 120 73.3
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 6.5e-45 184.1 119 74.8
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 1.1e-44 183.3 125 71.2
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 1.1e-44 183.3 119 72.3
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 1.1e-44 183.3 119 75.6
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 1.9e-44 182.6 119 73.9
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 2.5e-44 182.2 118 72.0
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 3.2e-44 181.8 120 71.7
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 5.5e-44 181.0 120 71.7
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 5.5e-44 181.0 120 71.7
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 5.5e-44 181.0 120 73.3
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 7.2e-44 180.6 120 73.3
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 7.2e-44 180.6 120 72.5
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 9.4e-44 180.3 119 71.4
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 9.4e-44 180.3 119 73.9
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 9.4e-44 180.3 125 70.4
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 9.4e-44 180.3 119 73.1
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 2.7e-43 178.7 120 73.3
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 2.7e-43 178.7 119 71.4
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 2.7e-43 178.7 119 71.4
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 2.7e-43 178.7 119 73.9
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 3.6e-43 178.3 120 70.8
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 6.1e-43 177.6 119 73.1
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 7.9e-43 177.2 120 71.7
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 7.9e-43 177.2 120 71.7
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 1.0e-42 176.8 115 73.0
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 1.0e-42 176.8 119 73.1
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 1.0e-42 176.8 119 73.9
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 1.0e-42 176.8 120 70.8
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 1.0e-42 176.8 120 70.8
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 1.0e-42 176.8 119 72.3
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.4e-42 176.4 120 71.7
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 1.8e-42 176.0 119 70.6
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 1.8e-42 176.0 120 70.0
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 3.0e-42 175.3 120 70.8
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 3.0e-42 175.3 119 69.7
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 3.0e-42 175.3 119 69.7
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 3.9e-42 174.9 119 72.3
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 5.1e-42 174.5 116 70.7
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 5.1e-42 174.5 119 69.7
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 5.1e-42 174.5 120 68.3
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 6.7e-42 174.1 119 71.4
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 8.8e-42 173.7 119 69.7
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 8.8e-42 173.7 119 68.9
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 8.8e-42 173.7 119 69.7
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 1.1e-41 173.3 119 71.4
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 1.5e-41 172.9 98 80.6
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 2.0e-41 172.6 120 69.2
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 2.5e-41 172.2 116 69.0
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 2.5e-41 172.2 115 72.2
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 2.5e-41 172.2 120 67.5
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.3e-41 171.8 116 69.0
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 3.3e-41 171.8 115 72.2
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 3.3e-41 171.8 120 70.0
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 5.7e-41 171.0 119 68.9
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 5.7e-41 171.0 120 68.3
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 5.7e-41 171.0 119 68.1
Hma1.2p1_0009F.1_g006310 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 7.4e-41 170.6 118 71.2
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 1.3e-40 169.9 119 68.9
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 2.2e-40 169.1 120 67.5
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 2.4e-39 165.6 120 67.5
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 3.1e-39 165.2 119 67.2
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.1e-39 165.2 121 66.1
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 4.1e-39 164.9 120 65.8
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 5.3e-39 164.5 119 68.9
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 9.1e-39 163.7 121 65.3
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.2e-38 163.3 119 67.2
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 1.2e-38 163.3 120 66.7
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 2.6e-38 162.2 119 67.2
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 4.5e-38 161.4 121 63.6
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.3e-37 159.8 119 68.1
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 2.2e-37 159.1 118 67.8
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 2.2e-37 159.1 146 56.8
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 2.9e-37 158.7 120 63.3
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 3.8e-37 158.3 118 68.6
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 8.5e-37 157.1 120 62.5
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 8.5e-37 157.1 118 67.8
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 8.5e-37 157.1 121 62.0
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 1.4e-36 156.4 121 61.2
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 1.9e-36 156.0 120 63.3
BcaC02g07297 Brassica carinata HOM05D003427 ORTHO05D003927 2.5e-36 155.6 120 61.7
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 3.2e-36 155.2 114 62.3
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 4.2e-36 154.8 121 60.3
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 5.5e-36 154.5 120 60.8
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 7.2e-36 154.1 120 60.8
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 7.2e-36 154.1 121 62.8
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 9.4e-36 153.7 116 65.5
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 1.2e-35 153.3 120 59.2
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 1.2e-35 153.3 121 59.5
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.6e-35 152.9 118 62.7
Atru.chr13.1350 Acer truncatum HOM05D003427 ORTHO05D003927 2.1e-35 152.5 107 70.1
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 2.1e-35 152.5 93 75.3
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 4.7e-35 151.4 115 63.5
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 6.1e-35 151.0 120 61.7
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 7.9e-35 150.6 115 62.6
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 1.4e-34 149.8 115 63.5
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 1.8e-34 149.4 115 63.5
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 1.8e-34 149.4 115 63.5
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 1.8e-34 149.4 119 59.7
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 3.0e-34 148.7 147 55.1
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 3.0e-34 148.7 115 62.6
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 1.5e-33 146.4 119 59.7
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 1.5e-33 146.4 119 59.7
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 4.4e-33 144.8 115 61.7
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 1.7e-32 142.9 119 58.0
MD05G1028300 Malus domestica HOM05D003427 ORTHO05D003927 1.7e-32 142.9 143 53.8
HPP92_012126 Vanilla planifolia HOM05D003427 ORTHO05D003927 8.2e-32 140.6 120 57.5
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 2.4e-31 139.0 116 59.5
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.1e-31 138.7 114 62.3
MD15G1354200 Malus domestica HOM05D003427 ORTHO05D003927 5.9e-30 134.4 109 62.4
vmacro12551 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.7e-29 132.9 111 61.3
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 3.8e-29 131.7 79 79.7
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 9.4e-28 127.1 106 57.5
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 2.1e-27 125.9 119 54.6
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 4.7e-27 124.8 119 47.9
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 6.1e-27 124.4 118 50.8
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 6.1e-27 124.4 99 60.6
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 8.8e-26 120.6 121 54.5
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 4.4e-25 118.2 119 50.4
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 5.7e-25 117.9 119 48.7
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 7.5e-25 117.5 119 46.2
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 4.8e-24 114.8 120 50.8
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 1.3e-21 106.7 116 44.0
Lj4A597G14 Lonicera japonica HOM05D003427 ORTHO05D003927 6.5e-21 104.4 72 68.1
Nitab4.5_0001273g0070 Nicotiana tabacum HOM05D003427 ORTHO05D003927 4.2e-20 101.7 120 47.5
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.5e-20 101.3 93 49.5
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 3.6e-19 98.6 114 42.1
Aqoxy1G02473 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 1.8e-18 96.3 72 63.9
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 6.8e-18 94.4 119 39.5
SEGI_10482 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.7e-17 91.3 93 44.1
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 2.2e-16 89.4 67 58.2
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 3.7e-16 88.6 50 82.0
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 8.3e-16 87.4 90 46.7
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 3.1e-15 85.5 58 69.0
Ah.05g172210 Amaranthus hybridus HOM05D003427 ORTHO05D003927 7.0e-15 84.3 62 66.1
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 3.5e-14 82.0 111 45.0
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 1.7e-13 79.7 49 77.6
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 6.5e-13 77.8 49 75.5
unitig_748.g7680 Utricularia gibba HOM05D003427 ORTHO05D003927 1.5e-12 76.6 79 49.4
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 7.2e-12 74.3 46 73.9
ATR0850G001 Amborella trichopoda HOM05D003427 ORTHO05D003927 2.3e-10 69.3 69 49.3
MD08G1168800 Malus domestica HOM05D003427 ORTHO05D003927 3.0e-10 68.9 40 75.0
Migut.C01160 Erythranthe guttata HOM05D003427 ORTHO05D003927 5.2e-10 68.2 118 39.0


User provided reference genes

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