Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.7e-174 615.9 312 100.0
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 5.8e-151 537.7 312 89.1
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.2e-140 503.4 309 80.6
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 4.3e-138 495.0 309 79.3
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 2.8e-137 492.3 309 79.9
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.1e-136 490.3 309 79.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 4.0e-136 488.4 309 79.9
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 3.1e-128 462.2 308 73.1
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.2e-127 460.3 309 73.8
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.0e-126 457.2 309 72.5
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.8e-126 455.3 309 72.5
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.1e-125 453.8 309 71.2
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 3.2e-125 452.2 309 71.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 6.1e-124 448.0 309 71.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.3e-123 446.8 309 70.9
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 8.7e-123 444.1 309 70.2
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 9.7e-122 440.7 310 69.4
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.3e-121 440.3 308 69.5
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.7e-121 438.7 304 71.4
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.8e-121 438.3 309 70.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 8.2e-121 437.6 310 71.3
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.4e-120 436.8 308 69.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 3.1e-120 435.6 308 69.5
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 4.1e-120 435.3 308 68.8
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 9.0e-120 434.1 309 69.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.5e-119 433.3 310 69.7
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.4e-119 432.2 310 69.4
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 3.4e-119 432.2 310 69.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 5.9e-119 431.4 309 68.9
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.3e-118 430.3 272 77.6
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.7e-118 429.9 308 68.5
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 5.0e-118 428.3 309 70.6
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.5e-118 427.9 310 68.1
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 6.5e-118 427.9 312 68.6
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.5e-118 427.9 308 67.9
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.1e-117 427.2 309 68.6
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.9e-117 426.4 308 67.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.2e-117 425.2 300 71.7
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.2e-116 423.7 307 68.4
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.6e-116 423.3 308 66.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 6.1e-116 421.4 308 66.9
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.4e-115 420.2 316 66.8
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 3.0e-115 419.1 309 67.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 3.0e-115 419.1 304 70.1
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 5.1e-115 418.3 309 68.6
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 8.8e-115 417.5 308 66.6
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.1e-114 417.2 307 67.4
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.5e-114 416.8 305 68.9
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 2.0e-114 416.4 305 65.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 9.7e-114 414.1 309 65.0
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.2e-113 412.9 274 73.4
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.1e-112 409.1 310 64.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 4.1e-112 408.7 307 65.8
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 6.9e-112 407.9 315 65.4
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.2e-111 407.1 310 63.5
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.6e-111 406.0 309 64.4
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.6e-111 406.0 312 65.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 3.4e-111 405.6 310 65.2
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 7.7e-111 404.4 309 65.0
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.7e-110 403.3 310 65.8
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.7e-110 403.3 355 59.2
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.2e-110 402.9 310 64.2
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.9e-110 402.5 313 69.0
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.1e-109 400.6 310 64.5
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.9e-109 399.8 308 64.6
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.9e-109 399.8 307 68.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.2e-108 397.1 310 63.9
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.1e-108 396.4 319 63.0
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 3.6e-108 395.6 309 63.1
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.3e-106 389.0 310 63.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 9.7e-106 387.5 314 62.4
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.8e-105 386.0 308 62.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.7e-105 385.6 309 63.1
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.1e-104 384.0 310 65.2
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.8e-104 383.3 310 60.0
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.8e-104 383.3 310 61.0
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 4.1e-104 382.1 313 60.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 5.3e-104 381.7 303 61.7
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.2e-103 380.6 289 65.7
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 7.7e-103 377.9 308 60.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 5.0e-102 375.2 268 69.0
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.5e-101 372.9 309 60.5
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.0e-98 363.2 311 59.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.0e-98 363.2 310 59.7
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 9.7e-98 360.9 310 57.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-97 360.5 304 62.8
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-97 360.1 304 62.8
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.8e-97 358.6 304 62.5
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 4.8e-97 358.6 308 59.1
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.1e-96 357.5 304 62.5
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.4e-96 357.1 308 59.1
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.8e-96 356.7 309 58.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.1e-96 355.5 303 62.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.1e-96 355.5 303 62.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-95 354.0 304 62.2
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.6e-95 353.6 308 58.4
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-95 353.6 304 62.2
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-95 353.6 304 62.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.7e-95 352.8 304 61.8
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 2.7e-95 352.8 354 51.7
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.5e-95 352.4 309 60.2
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.5e-95 352.4 313 57.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 6.5e-94 348.2 309 57.3
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.5e-94 348.2 314 56.1
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.1e-92 343.2 309 55.7
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.4e-91 340.5 309 55.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-91 340.1 303 60.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-91 339.7 231 68.4
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 8.8e-91 337.8 309 54.0
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.6e-90 336.3 308 55.2
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.7e-89 332.4 233 67.8
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 6.3e-89 331.6 308 54.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-86 323.9 309 52.8
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-86 323.9 309 52.8
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.7e-86 323.6 308 53.9
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 3.2e-85 319.3 310 52.6
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 3.2e-85 319.3 310 52.6
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 4.2e-85 318.9 311 52.4
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 9.5e-85 317.8 308 52.6
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 8.0e-84 314.7 310 53.9
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 8.8e-83 311.2 309 51.5
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.5e-82 310.5 306 51.3
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 3.4e-82 309.3 311 56.3
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 6.6e-78 295.0 311 52.1
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-77 292.0 207 69.1
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.7e-76 288.9 307 47.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 4.7e-76 288.9 322 47.2
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 4.0e-75 285.8 182 74.2
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.9e-71 271.9 225 60.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.0e-70 268.9 196 62.8
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.9e-69 266.9 260 51.5
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.5e-61 240.7 164 80.5
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.0e-54 216.5 170 59.4
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.8e-51 207.2 144 67.4
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 5.2e-51 205.7 149 63.8
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 9.9e-50 201.4 232 48.3
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.2e-47 194.5 345 35.9
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 3.9e-38 162.9 161 59.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.9e-33 146.7 232 39.2
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 4.5e-26 122.9 152 48.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.9e-25 120.2 91 73.6
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.1e-21 108.2 262 31.3
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 4.3e-21 106.3 262 30.9
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 9.6e-21 105.1 76 61.8
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 5.3e-19 99.4 232 28.4
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.8e-18 95.9 101 53.5
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.7e-17 94.4 318 24.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.1e-16 89.0 91 57.1
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-15 88.2 72 55.6
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 3.5e-15 86.7 52 75.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 7.9e-15 85.5 51 66.7
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.1e-08 65.1 309 25.6
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.2e-08 63.2 309 25.6
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 7.2e-08 62.4 293 24.6
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-07 61.6 46 56.5
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 6.1e-07 59.3 48 58.3


User provided reference genes

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