Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 5.4e-279 963.8 509 100.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.0e-270 935.3 510 98.0
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.5e-191 672.5 515 73.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.8e-187 658.3 512 71.1
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 8.2e-187 657.5 511 70.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.4e-173 613.6 522 62.6
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.4e-170 603.6 501 67.3
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 7.0e-170 601.3 514 63.6
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.5e-167 591.7 510 65.7
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 2.7e-166 589.3 511 63.4
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.6e-158 563.5 514 61.1
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.0e-157 560.8 507 60.6
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 2.2e-147 526.6 502 57.6
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.7e-147 525.8 506 57.3
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-146 524.2 506 57.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.4e-146 523.1 510 58.4
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.4e-146 521.9 506 56.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.6e-145 520.4 506 55.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 6.6e-144 515.0 506 56.1
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 8.6e-144 514.6 506 56.3
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.3e-143 512.7 512 56.1
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 5.6e-143 511.9 526 55.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 9.5e-143 511.1 516 55.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 2.3e-141 506.5 507 56.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.9e-141 504.6 491 56.4
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 4.4e-140 502.3 503 55.9
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 5.4e-138 495.4 505 55.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 7.8e-137 491.5 511 54.0
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 5.1e-136 488.8 473 56.9
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-135 487.3 507 55.8
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.5e-135 486.5 505 54.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 5.6e-135 485.3 518 52.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 9.5e-135 484.6 513 55.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.2e-133 478.8 511 51.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 4.4e-132 475.7 515 53.6
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.3e-131 474.2 504 54.2
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.9e-131 473.0 509 52.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 3.7e-131 472.6 511 52.3
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.4e-130 470.7 501 54.5
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.6e-129 465.7 519 53.0
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.0e-128 464.5 513 51.5
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.0e-128 463.0 377 65.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.9e-127 460.3 505 54.1
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 5.6e-127 458.8 510 50.4
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 9.5e-127 458.0 513 52.8
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.6e-126 457.2 504 52.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.1e-126 456.8 513 52.6
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-125 453.8 511 52.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 3.1e-125 453.0 488 54.1
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 6.8e-125 451.8 407 60.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 6.8e-125 451.8 510 50.8
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 8.9e-125 451.4 514 51.2
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-124 450.7 511 52.8
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.6e-124 449.9 504 51.6
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.4e-124 449.5 513 52.8
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.3e-123 447.6 433 58.4
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.9e-123 446.4 433 58.2
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-122 444.5 511 51.3
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-122 444.5 431 57.5
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.9e-122 443.7 516 49.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.4e-122 443.4 510 50.6
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.2e-122 442.6 510 49.8
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 3.5e-121 439.5 508 51.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.7e-120 437.2 462 54.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.3e-120 436.8 518 50.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.6e-118 430.6 506 50.8
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 8.1e-118 428.3 479 51.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 3.1e-117 426.4 496 50.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 5.3e-117 425.6 495 50.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.4e-116 422.5 473 51.0
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 5.4e-114 415.6 506 48.8
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 6.0e-113 412.1 519 47.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.3e-112 410.2 526 49.2
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.1e-111 407.9 465 49.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 9.6e-111 404.8 318 67.6
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 9.6e-111 404.8 511 46.2
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.1e-109 401.4 514 46.5
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.7e-107 394.0 482 47.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.7e-107 394.0 432 50.9
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.6e-105 387.5 512 44.7
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 3.5e-105 386.3 463 49.9
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.0e-104 384.8 428 51.4
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.8e-104 384.0 509 47.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.3e-104 383.6 507 44.6
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.9e-103 380.6 463 49.2
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 3.3e-103 379.8 504 45.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.3e-103 379.4 427 49.6
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.4e-103 378.6 510 45.3
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.3e-102 377.9 524 46.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.8e-102 376.7 464 45.9
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.8e-102 376.7 464 45.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.7e-102 376.3 492 46.5
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.2e-102 375.6 438 50.7
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.9e-101 372.1 454 47.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 9.0e-101 371.7 431 49.9
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.9e-99 366.7 447 48.8
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.8e-96 357.5 501 44.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 8.7e-96 355.1 246 74.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.3e-95 353.2 421 50.8
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.3e-95 352.8 450 46.9
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.8e-93 347.4 434 46.1
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 6.9e-93 345.5 520 39.6
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.3e-91 341.3 427 47.1
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.7e-91 340.9 423 47.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 8.4e-91 338.6 511 41.7
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 4.2e-90 336.3 520 40.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-88 330.9 521 41.8
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.9e-87 327.4 517 40.6
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 4.3e-87 326.2 522 39.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.8e-85 320.9 388 50.8
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 9.0e-85 318.5 516 39.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 4.5e-84 316.2 209 71.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 7.7e-84 315.5 519 40.1
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 5.0e-83 312.8 421 46.1
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 5.5e-82 309.3 528 38.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-81 307.8 211 72.0
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 6.1e-81 305.8 520 38.5
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.5e-79 301.2 432 41.9
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.0e-76 290.8 413 42.4
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 3.8e-75 286.6 513 38.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 5.0e-75 286.2 515 36.7
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.8e-72 277.7 460 37.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.3e-70 271.6 378 40.5
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 3.8e-67 260.0 170 74.7
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 8.0e-65 252.3 503 34.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.8e-64 251.1 408 38.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.5e-63 248.1 410 39.5
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.6e-63 247.3 419 41.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.4e-63 245.7 410 39.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.7e-62 244.6 215 58.6
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.4e-61 240.7 453 35.3
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.2e-58 230.3 433 36.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.2e-58 229.9 483 35.0
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.0e-56 225.3 186 63.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.0e-56 225.3 186 63.4
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.2e-56 223.0 543 31.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 8.3e-54 215.7 506 33.6
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-50 204.1 441 35.4
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 8.0e-49 199.1 455 32.7
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.0e-48 197.2 109 81.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.8e-46 190.7 460 33.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.6e-41 173.7 171 52.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 4.7e-41 173.3 170 52.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.5e-39 168.3 176 50.0
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.7e-38 164.9 464 30.6
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.8e-37 161.4 172 47.7
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.3e-35 155.2 353 33.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.6e-35 152.9 161 49.7
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.2e-33 148.7 353 32.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.6e-31 141.0 414 28.5
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.4e-31 140.6 274 38.3
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.4e-31 140.6 274 38.3
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 3.2e-29 134.0 107 65.4
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.9e-18 98.2 280 30.7
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 3.9e-11 73.9 158 33.5


User provided reference genes

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