Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WI1GF8 Arachis hypogaea HOM05D013665 ORTHO05D011148 1.3e-125 453.0 210 100.0
arahy.Tifrunner.gnm1.ann1.WK22WR Arachis hypogaea HOM05D013665 ORTHO05D011148 5.3e-124 447.6 210 98.6
Glyma.05G032800 Glycine max HOM05D013665 ORTHO05D011148 6.8e-79 297.7 210 66.2
Ca_21884_v3 Cicer arietinum L. HOM05D013665 ORTHO05D011148 2.0e-78 296.2 211 66.8
Lj4g0022951 Lotus japonicus HOM05D013665 ORTHO05D011148 3.4e-78 295.4 213 66.2
Lalb_Chr13g0297991 Lupinus albus HOM05D013665 ORTHO05D011148 1.3e-32 144.1 117 59.0
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 5.0e-21 105.5 168 32.1
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 7.2e-20 101.7 180 30.0
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 2.4e-15 86.7 179 31.8
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.1e-15 85.9 200 27.5
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.9e-15 85.1 200 27.5
Lj5g0000021 Lotus japonicus HOM05D010643 ORTHO05D011148 7.7e-14 81.6 178 28.1
Lj1g0008461 Lotus japonicus HOM05D010643 ORTHO05D011148 1.7e-13 80.5 180 28.3
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 2.5e-12 76.6 137 32.1
CARHR124520 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.2e-12 76.3 130 34.6
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 3.2e-12 76.3 150 30.7
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.5e-12 75.5 137 30.7
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.4e-12 74.7 136 30.1
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-11 74.3 196 25.0
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 1.2e-11 74.3 205 26.3
AUR62022035 Chenopodium quinoa HOM05D000022 ORTHO05D013985 1.6e-11 73.9 137 29.2
AUR62044423 Chenopodium quinoa HOM05D000022 ORTHO05D013985 1.6e-11 73.9 137 29.2
Aqoxy3G01132 Aquilegia oxysepala HOM05D013665 ORTHO05D017373 2.7e-11 73.2 147 32.0
Aqoxy4G01607 Aquilegia oxysepala HOM05D013665 ORTHO05D011148 2.7e-11 73.2 148 33.1
CiPaw.15G073500 Carya illinoinensis HOM05D000003 ORTHO05D000004 4.7e-11 72.4 146 31.5
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-10 70.9 143 29.4
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-10 70.9 202 24.3
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-10 69.3 131 29.8
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 5.1e-10 68.9 79 40.5
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 5.1e-10 68.9 132 29.5
Actinidia07755 Actinidia chinensis HOM05D000003 ORTHO05D012910 6.7e-10 68.6 73 46.6
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 6.7e-10 68.6 142 26.1
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 6.7e-10 68.6 132 28.8
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 8.8e-10 68.2 195 25.6
PSO782G3767 Papaver somniferum HOM05D000003 ORTHO05D008897 1.1e-09 67.8 200 27.0
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-09 67.8 132 28.8
CANSAT56G4532 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-09 67.4 137 33.6
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-09 67.0 200 28.5
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-09 67.0 141 27.7
CiPaw.08G120100 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.6e-09 66.6 156 29.5
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 2.6e-09 66.6 175 25.1
Manes.13G092620 Manihot esculenta HOM05D000003 ORTHO05D000004 2.6e-09 66.6 133 29.3
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-09 66.6 141 29.8
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 4.4e-09 65.9 137 27.7
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 4.4e-09 65.9 107 33.6
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.7e-09 64.7 71 39.4
Glyma.07G238550 Glycine max HOM05D000003 ORTHO05D000004 9.7e-09 64.7 210 26.2
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 9.7e-09 64.7 142 25.4
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-08 64.3 138 31.9
Ah.15g100100 Amaranthus hybridus HOM05D000003 ORTHO05D000004 1.3e-08 64.3 161 28.0
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.3e-08 64.3 197 25.9
Lj5P296T4 Lonicera japonica HOM05D000003 ORTHO05D000004 1.3e-08 64.3 164 28.7
Lj9P2T15 Lonicera japonica HOM05D000003 ORTHO05D000167 1.3e-08 64.3 140 27.1
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 1.3e-08 64.3 203 25.1
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 1.3e-08 64.3 97 37.1
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.9 200 22.5
Prupe.6G123900 Prunus persica HOM05D000003 ORTHO05D000004 1.7e-08 63.9 194 25.3
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-08 63.9 136 25.0
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-08 63.9 126 30.2
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 1.7e-08 63.9 128 30.5
TPR.G39272 Trifolium pratense HOM05D000003 ORTHO05D000004 1.7e-08 63.9 73 37.0
CANSAT25G1265 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-08 63.5 181 27.1
CiPaw.14G093100 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.2e-08 63.5 197 24.9
CiPaw.15G051200 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.2e-08 63.5 195 26.7
Lj2g0002183 Lotus japonicus HOM05D010643 ORTHO05D012910 2.8e-08 63.2 69 40.6
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 3.7e-08 62.8 78 37.2
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 4.8e-08 62.4 185 24.9
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-08 62.0 198 25.8
TPR.G36225 Trifolium pratense HOM05D013665 ORTHO05D011148 6.3e-08 62.0 88 36.4
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-08 61.6 136 28.7
CiPaw.16G041700 Carya illinoinensis HOM05D000003 ORTHO05D000004 8.2e-08 61.6 197 24.9
TPR.G16685 Trifolium pratense HOM05D013665 ORTHO05D012377 8.2e-08 61.6 103 34.0
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 8.2e-08 61.6 74 39.2
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 61.2 130 28.5
EL10Ac5g10920 Beta vulgaris HOM05D000003 ORTHO05D012910 1.1e-07 61.2 68 41.2
QL05p018687 Quercus lobata HOM05D000106 ORTHO05D000160 1.1e-07 61.2 192 25.0
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-07 61.2 74 39.2
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-07 61.2 74 39.2
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 60.8 200 24.5
EL10Ac1g01979 Beta vulgaris HOM05D013665 ORTHO05D011148 1.4e-07 60.8 129 31.0
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-07 60.5 206 27.7
LjContig00408g0000741 Lotus japonicus HOM05D000003 ORTHO05D001390 1.8e-07 60.5 189 26.5
QL05p015875 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-07 60.5 135 28.9
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-07 60.5 68 36.8
COL.COLO4_30893 Corchorus olitorius HOM05D000327 ORTHO05D000218 2.4e-07 60.1 87 37.9
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 3.1e-07 59.7 91 30.8
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 4.1e-07 59.3 64 43.8
Manes.12G129601 Manihot esculenta HOM05D000003 ORTHO05D011148 4.1e-07 59.3 85 36.5
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 4.1e-07 59.3 127 32.3
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 4.1e-07 59.3 210 22.4
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.1e-07 59.3 74 37.8
PSO063G2089 Papaver somniferum HOM05D003407 ORTHO05D001026 5.3e-07 58.9 151 27.8
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-07 58.5 68 41.2
QL12p029380 Quercus lobata HOM05D000003 ORTHO05D000004 7.0e-07 58.5 137 26.3
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-07 58.2 193 24.4
CANSAT35G0340 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-07 58.2 72 40.3
QL05p078226 Quercus lobata HOM05D000003 ORTHO05D000004 9.1e-07 58.2 162 26.5
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 9.1e-07 58.2 75 40.0
Aqoxy12s031 Aquilegia oxysepala HOM05D000003 ORTHO05D012910 1.2e-06 57.8 83 41.0
CANSAT56G3271 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.8 208 20.7
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.2e-06 57.8 70 38.6
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.2e-06 57.8 68 41.2
CANSAT37G0018 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-06 57.4 68 42.6
Lj4C747T2 Lonicera japonica HOM05D000003 ORTHO05D000004 1.5e-06 57.4 76 38.2
Psat2g152240 Pisum sativum HOM05D000003 ORTHO05D000022 1.5e-06 57.4 81 33.3
QL04p022409 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-06 57.4 184 25.5
SMO297G0034 Selaginella moellendorffii HOM05D011545 ORTHO05D014253 1.5e-06 57.4 209 26.8
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-06 57.0 201 24.4
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-06 57.0 136 27.9
PSO339G0118 Papaver somniferum HOM05D003407 ORTHO05D001026 2.0e-06 57.0 151 29.8
Psat1g139400 Pisum sativum HOM05D009122 ORTHO05D012377 2.0e-06 57.0 93 32.3
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 57.0 201 23.9
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-06 56.6 140 25.0
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.6e-06 56.6 69 37.7
Lj6g0017573 Lotus japonicus HOM05D000003 ORTHO05D000004 2.6e-06 56.6 110 32.7
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 2.6e-06 56.6 76 39.5
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-06 56.6 133 27.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 56.2 202 23.8
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 3.5e-06 56.2 94 28.7
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 3.5e-06 56.2 95 31.6
QL05p030558 Quercus lobata HOM05D000003 ORTHO05D000004 3.5e-06 56.2 127 26.8
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 3.5e-06 56.2 174 26.4
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.8 70 37.1
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.8 137 29.2
PSO384G4399 Papaver somniferum HOM05D000003 ORTHO05D001026 4.5e-06 55.8 103 30.1
Psat4g049280 Pisum sativum HOM05D009122 ORTHO05D011085 4.5e-06 55.8 85 34.1
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-06 55.5 206 23.8
CANSAT11G1211 Cannabis sativa HOM05D000003 ORTHO05D000167 5.9e-06 55.5 156 27.6
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 55.5 68 39.7
PSO238G0046 Papaver somniferum HOM05D003407 ORTHO05D001026 5.9e-06 55.5 74 41.9
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 7.7e-06 55.1 200 23.5
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.7e-06 55.1 199 22.1
CiPaw.07G081000 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.7e-06 55.1 186 23.7
CiPaw.07G085700 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.7e-06 55.1 203 27.1
CiPaw.11G093000 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.7e-06 55.1 77 39.0
Psat6g003440 Pisum sativum HOM05D000003 ORTHO05D012377 7.7e-06 55.1 82 29.3
TWI23G0529 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-06 55.1 68 39.7


User provided reference genes

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