Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.3e-151 538.9 275 100.0
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 1.4e-140 503.1 257 99.2
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 5.9e-139 497.7 257 98.4
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 1.4e-116 423.3 251 84.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 9.1e-116 420.6 258 82.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 4.5e-115 418.3 256 83.6
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 1.1e-113 413.7 258 82.6
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-113 413.3 258 81.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 2.7e-112 409.1 258 81.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 2.7e-112 409.1 254 81.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 5.7e-110 401.4 264 76.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 3.7e-109 398.7 265 76.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 4.9e-109 398.3 257 77.0
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 1.1e-108 397.1 259 77.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.8e-108 396.4 258 79.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 1.8e-108 396.4 262 76.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 3.1e-108 395.6 256 77.3
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 3.1e-108 395.6 262 75.2
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 4.1e-108 395.2 257 79.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 2.0e-107 392.9 262 74.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 2.7e-107 392.5 258 76.0
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 4.5e-107 391.7 258 76.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 4.5e-107 391.7 256 76.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 1.3e-106 390.2 269 74.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 1.7e-106 389.8 264 75.4
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 2.3e-106 389.4 259 75.7
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 1.1e-105 387.1 256 75.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 2.5e-105 386.0 258 77.1
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 2.5e-105 386.0 257 74.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 3.3e-105 385.6 258 74.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.2e-105 385.2 266 72.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.2e-105 385.2 266 72.2
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 4.2e-105 385.2 259 74.9
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.5e-105 384.8 290 69.7
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.5e-105 384.8 290 69.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 9.5e-105 384.0 259 73.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.2e-104 383.6 266 71.8
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 1.2e-104 383.6 258 75.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.6e-104 382.1 283 70.7
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 4.7e-104 381.7 252 76.6
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 4.7e-104 381.7 257 74.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 6.1e-104 381.3 266 72.9
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 8.0e-104 380.9 268 74.3
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.0e-103 380.6 257 75.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 1.8e-103 379.8 256 74.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 1.8e-103 379.8 261 74.3
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 2.3e-103 379.4 257 75.1
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.0e-103 379.0 301 66.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 4.0e-103 378.6 259 73.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 4.0e-103 378.6 255 74.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 4.0e-103 378.6 257 73.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 4.0e-103 378.6 258 74.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 8.9e-103 377.5 251 74.9
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 8.9e-103 377.5 251 74.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 8.9e-103 377.5 251 74.9
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 1.2e-102 377.1 261 73.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.5e-102 376.7 258 73.3
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 2.0e-102 376.3 251 74.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 2.0e-102 376.3 263 73.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 2.0e-102 376.3 259 73.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 2.6e-102 375.9 252 74.6
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 2.6e-102 375.9 258 76.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 2.6e-102 375.9 258 73.6
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 3.4e-102 375.6 258 75.2
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 5.7e-102 374.8 259 73.7
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 5.7e-102 374.8 255 73.7
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 5.7e-102 374.8 257 73.9
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 5.7e-102 374.8 266 72.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 7.5e-102 374.4 263 73.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 7.5e-102 374.4 255 74.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 9.8e-102 374.0 252 75.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 9.8e-102 374.0 262 71.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 9.8e-102 374.0 261 73.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.3e-101 373.6 263 73.4
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 2.2e-101 372.9 251 74.1
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 2.2e-101 372.9 263 71.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 3.7e-101 372.1 252 73.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 3.7e-101 372.1 265 71.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 4.9e-101 371.7 252 74.2
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 8.3e-101 370.9 257 73.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 1.4e-100 370.2 261 72.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 1.8e-100 369.8 252 73.8
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 1.8e-100 369.8 255 74.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 1.8e-100 369.8 257 73.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 2.4e-100 369.4 259 73.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 5.4e-100 368.2 257 72.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 1.7e-98 363.2 257 72.0
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.7e-98 363.2 258 71.3
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 2.9e-98 362.5 252 72.6
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 2.9e-98 362.5 252 72.6
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 8.6e-98 360.9 268 70.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 1.5e-97 360.1 268 70.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 7.3e-97 357.8 254 70.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.2e-96 357.1 261 71.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 1.6e-96 356.7 251 74.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.8e-96 355.9 256 72.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 2.8e-96 355.9 256 70.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 3.6e-96 355.5 256 72.3
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 1.8e-95 353.2 256 73.0
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.8e-95 353.2 252 72.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 5.2e-95 351.7 261 68.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 1.5e-94 350.1 264 68.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 2.6e-94 349.4 252 72.2
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 3.4e-94 349.0 265 68.3
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 3.4e-94 349.0 264 68.6
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.4e-94 348.6 265 68.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.4e-94 348.6 265 68.3
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 6.4e-93 344.7 264 68.2
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.1e-92 344.0 258 69.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 4.1e-92 342.0 256 69.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.0e-90 335.9 257 67.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 3.0e-90 335.9 251 67.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 6.6e-90 334.7 248 66.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 8.6e-90 334.3 235 75.7
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 3.3e-89 332.4 233 73.4
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.2e-88 330.5 253 68.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.1e-88 329.7 250 65.2
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 4.7e-88 328.6 253 68.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 4.7e-88 328.6 253 66.8
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-87 327.0 235 74.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 5.2e-87 325.1 255 66.3
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-86 322.8 220 76.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 5.4e-84 315.1 269 62.5
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 1.2e-80 303.9 268 63.1
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 8.1e-80 301.2 259 63.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.7e-77 293.5 194 79.4
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 6.0e-75 285.0 192 75.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.0e-75 285.0 249 57.8
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.3e-73 278.9 205 74.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.2e-72 277.3 252 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.6e-72 276.9 248 56.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 9.9e-70 267.7 247 55.1
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.5e-67 259.2 326 47.9
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.0e-67 258.5 242 57.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-66 257.7 253 55.3
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.4e-63 247.3 263 52.9
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 8.4e-61 238.0 170 76.5
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-60 237.3 192 63.0
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.6e-56 223.8 134 79.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.9e-55 218.4 208 60.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.9e-53 213.0 166 68.1
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.4e-47 193.4 181 61.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 7.4e-41 171.8 132 65.9
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.7e-40 169.5 184 53.8
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 7.6e-38 161.8 115 72.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-37 159.5 126 69.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.6e-32 144.1 131 60.3
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 5.9e-30 135.6 72 87.5
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-28 131.3 76 80.3
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 9.4e-28 128.3 85 72.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 9.4e-28 128.3 104 69.2
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 6.7e-26 122.1 74 78.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.1e-25 121.3 293 31.4
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.7e-22 108.6 64 81.2
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 2.9e-21 106.7 232 35.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 5.1e-18 95.9 72 66.7
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.3e-16 89.0 45 84.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 8.2e-16 88.6 52 82.7
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.2e-11 74.7 47 72.3


User provided reference genes

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