Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 3.5e-189 664.8 342 100.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.8e-188 661.4 342 99.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 7.3e-163 577.4 343 88.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.1e-109 399.8 352 63.1
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.6e-107 391.7 346 61.6
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.4e-105 386.3 328 62.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.6e-104 382.9 353 59.8
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.9e-103 378.6 298 66.8
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.0e-100 370.9 395 53.4
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.5e-96 357.1 291 65.6
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 7.9e-93 344.7 329 55.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.7e-92 341.7 308 58.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.9e-91 340.1 350 55.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 4.3e-91 339.0 338 55.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.7e-90 337.0 352 54.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.8e-90 336.3 340 54.1
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.8e-90 335.5 287 60.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.8e-90 335.5 344 53.2
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.4e-89 333.2 249 68.3
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.2e-88 330.9 314 55.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.6e-88 329.7 301 57.8
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.4e-88 329.3 287 57.8
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.5e-88 328.9 286 59.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 5.9e-88 328.6 334 54.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.7e-87 327.0 313 55.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.9e-87 326.2 333 52.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 8.5e-87 324.7 329 53.2
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.4e-86 323.9 333 52.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.1e-85 320.1 319 53.6
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.7e-85 319.7 336 51.2
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.6e-85 319.3 321 53.0
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 4.7e-85 318.9 305 55.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.7e-85 318.9 321 53.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.4e-84 317.4 338 53.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 5.1e-84 315.5 344 50.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 6.7e-84 315.1 287 55.7
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 8.8e-84 314.7 326 51.5
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.5e-83 313.9 317 53.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.6e-83 313.2 308 55.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.4e-83 311.6 292 56.2
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 7.4e-83 311.6 310 54.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 4.8e-82 308.9 289 55.0
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.4e-81 307.4 342 51.2
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-81 307.0 304 53.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 5.3e-81 305.4 355 50.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.5e-80 303.9 320 52.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.0e-80 303.5 311 51.4
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.5e-80 302.4 313 52.4
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.3e-79 300.8 294 52.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.7e-79 300.4 310 52.3
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.9e-79 299.7 311 51.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.8e-79 299.3 343 49.9
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 6.5e-79 298.5 338 47.6
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 8.5e-79 298.1 310 51.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.4e-78 297.4 332 50.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.5e-78 296.6 422 45.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.5e-78 296.6 331 50.5
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.2e-78 296.2 334 49.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 5.5e-78 295.4 251 59.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.1e-77 293.5 339 48.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 6.7e-76 288.5 297 53.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 8.8e-76 288.1 332 49.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.1e-75 287.7 368 46.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.5e-75 287.3 273 53.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-75 287.0 329 48.3
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.0e-75 287.0 292 53.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 9.7e-75 284.6 353 46.2
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.7e-74 283.9 333 46.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.8e-74 282.3 252 57.1
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.3e-74 282.0 248 56.5
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.4e-73 280.8 251 58.2
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.1e-73 279.6 287 50.9
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.0e-72 276.9 333 46.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.0e-72 276.9 251 55.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.9e-72 275.4 291 48.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.0e-71 274.6 289 50.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.0e-71 274.6 248 55.2
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-70 271.2 315 46.3
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.1e-70 271.2 315 47.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-70 271.2 329 47.4
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.9e-70 270.4 337 45.4
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.4e-70 268.1 319 48.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.1e-69 266.9 334 44.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.7e-69 265.8 326 44.5
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.0e-68 264.6 289 47.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.0e-68 262.7 349 43.0
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.0e-68 262.7 319 45.8
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.0e-68 262.7 288 48.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.7e-68 261.9 288 47.6
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 6.7e-68 261.9 289 48.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-67 260.8 333 44.4
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.5e-67 260.8 271 46.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 5.7e-67 258.8 326 42.6
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 5.7e-67 258.8 288 46.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 3.7e-66 256.1 335 43.3
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.7e-66 256.1 333 45.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.4e-65 254.2 339 43.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-65 253.8 336 41.7
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-65 253.8 283 46.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.1e-65 252.7 333 42.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.0e-65 251.9 335 43.3
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 9.1e-65 251.5 286 45.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 9.1e-65 251.5 291 45.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-64 250.8 337 42.1
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-64 250.4 291 45.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.0e-64 250.4 295 44.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 7.7e-64 248.4 337 41.5
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 7.7e-64 248.4 277 51.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-63 248.1 337 41.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.0e-63 248.1 344 41.9
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-63 246.5 340 41.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.9e-63 246.5 340 41.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-63 246.5 250 50.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.9e-63 246.5 371 41.5
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-62 243.8 318 41.8
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.5e-62 242.3 246 52.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-60 238.0 308 42.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.0e-60 236.1 252 50.4
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 4.4e-59 232.6 307 43.6
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.7e-58 230.7 287 44.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.8e-58 229.9 307 42.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.8e-58 229.9 291 45.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.1e-57 228.0 244 48.4
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.6e-55 218.4 243 50.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.3e-54 216.5 244 50.0
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.5e-54 215.7 243 49.0
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-53 213.0 237 48.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 4.7e-53 212.6 237 48.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.0e-52 209.5 238 50.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.2e-52 209.1 228 49.6
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.2e-52 209.1 245 48.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 8.9e-52 208.4 235 48.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-51 208.0 237 47.3
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.5e-51 207.6 235 47.7
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.0e-51 207.2 237 48.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.6e-51 206.8 207 52.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.0e-49 198.7 161 60.2
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.3e-46 189.9 171 57.9
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.2e-45 188.0 288 40.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.0e-44 183.3 256 43.0
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.9e-42 176.0 226 42.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.9e-41 174.1 164 57.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 5.4e-41 172.6 182 47.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.7e-40 170.2 140 61.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.9e-36 155.2 264 39.0
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 3.7e-34 149.8 157 51.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.1e-33 148.3 125 60.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.0e-32 142.5 172 45.3
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.3e-31 140.6 299 33.4
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.9e-31 139.8 85 88.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.1e-30 138.3 142 51.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 8.9e-28 128.6 156 47.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.9e-28 128.6 263 33.1
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 4.4e-27 126.3 151 47.7
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 6.4e-26 122.5 162 46.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.9e-25 120.9 202 38.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-25 120.6 149 43.6
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 3.2e-25 120.2 162 45.7
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.4e-25 119.4 165 38.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 6.0e-24 115.9 81 71.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.1e-22 111.7 280 30.4
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.5e-22 110.5 83 60.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.5e-22 110.5 209 33.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-20 105.1 76 60.5
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 2.1e-16 90.9 90 53.3
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.3e-15 88.2 84 48.8
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 9.6e-14 82.0 88 48.9
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.3e-07 60.8 204 29.4
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.9e-07 60.1 31 100.0
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.9e-07 60.1 71 46.5
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.6e-07 59.3 62 41.9
arahy.Tifrunner.gnm1.ann1.QQ0AFR Arachis hypogaea HOM05D012042 ORTHO05D086849 5.6e-06 56.2 29 82.8
TPR.G13891 Trifolium pratense HOM05D001860 ORTHO05D004922 5.6e-06 56.2 38 76.3


User provided reference genes

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