Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 7.1e-77 290.4 137 100.0
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 2.2e-22 109.4 57 87.7
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 7.2e-21 104.4 62 80.6
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.4e-19 100.1 77 66.2
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.8e-19 99.8 62 75.8
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.0e-19 99.0 62 74.2
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 4.0e-19 98.6 72 66.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 8.8e-19 97.4 65 70.8
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.2e-18 97.1 77 64.9
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.0e-18 96.3 78 60.3
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.0e-18 96.3 62 72.6
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.6e-18 95.9 62 69.4
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 2.6e-18 95.9 81 60.5
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 2.6e-18 95.9 77 63.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 4.4e-18 95.1 62 69.4
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-18 94.7 81 59.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.7e-18 94.7 62 69.4
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 5.7e-18 94.7 75 60.0
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 5.7e-18 94.7 78 56.4
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 7.5e-18 94.4 62 66.1
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.7e-18 94.0 81 59.3
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 9.7e-18 94.0 78 60.3
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 9.7e-18 94.0 87 57.5
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.3e-17 93.6 76 56.6
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.3e-17 93.6 76 56.6
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.3e-17 93.6 62 67.7
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.7e-17 93.2 62 71.0
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.7e-17 93.2 81 58.0
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.7e-17 93.2 62 67.7
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.7e-17 93.2 91 51.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.7e-17 93.2 62 69.4
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.2e-17 92.8 70 65.7
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 2.2e-17 92.8 62 66.1
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.2e-17 92.8 93 52.7
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.8e-17 92.4 71 62.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.8e-17 92.4 62 67.7
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 2.8e-17 92.4 79 57.0
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.8e-17 92.4 63 68.3
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 3.7e-17 92.0 62 69.4
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 4.8e-17 91.7 62 66.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 4.8e-17 91.7 68 64.7
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 6.3e-17 91.3 93 54.8
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 6.3e-17 91.3 79 55.7
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 1.1e-16 90.5 65 66.2
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.1e-16 90.5 63 66.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.1e-16 90.5 62 69.4
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.1e-16 90.5 62 66.1
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.8e-16 89.7 66 63.6
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.8e-16 89.7 105 44.8
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 1.8e-16 89.7 68 61.8
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.8e-16 89.7 137 38.7
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.4e-16 89.4 62 66.1
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 2.4e-16 89.4 62 64.5
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 3.1e-16 89.0 62 64.5
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 3.1e-16 89.0 61 67.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.1e-16 89.0 98 49.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 4.1e-16 88.6 67 59.7
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.1e-16 88.6 81 55.6
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 5.3e-16 88.2 78 57.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 5.3e-16 88.2 62 64.5
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.3e-16 88.2 68 58.8
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 9.1e-16 87.4 62 66.1
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.2e-15 87.0 80 55.0
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.2e-15 87.0 75 53.3
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.6e-15 86.7 72 55.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.0e-15 86.3 67 62.7
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.0e-15 86.3 106 43.4
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 2.7e-15 85.9 77 54.5
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.5e-15 85.5 62 64.5
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 4.5e-15 85.1 75 56.0
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 4.5e-15 85.1 67 59.7
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 5.9e-15 84.7 62 61.3
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.3e-14 83.6 62 59.7
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.3e-14 83.6 62 61.3
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.2e-14 82.8 69 56.5
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 2.9e-14 82.4 67 58.2
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.9e-14 82.4 62 62.9
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 2.9e-14 82.4 75 53.3
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.8e-14 82.0 62 61.3
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.8e-14 82.0 62 61.3
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 5.0e-14 81.6 61 62.3
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.5e-14 81.3 70 58.6
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.1e-13 80.5 62 59.7
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.5e-13 80.1 71 54.9
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.5e-13 80.1 84 51.2
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.5e-13 80.1 71 54.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.5e-13 80.1 69 53.6
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 2.5e-13 79.3 73 52.1
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 2.5e-13 79.3 61 59.0
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.2e-13 79.0 54 64.8
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.2e-13 79.0 54 64.8
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.2e-13 79.0 62 59.7
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 4.2e-13 78.6 71 53.5
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 4.2e-13 78.6 61 59.0
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 9.4e-13 77.4 61 59.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.2e-12 77.0 71 53.5
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.2e-12 77.0 71 53.5
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.2e-12 77.0 71 53.5
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.2e-12 77.0 66 59.1
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.6e-12 76.6 62 58.1
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.6e-12 76.6 44 81.8
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.1e-12 76.3 61 57.4
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.7e-12 75.9 68 54.4
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 8.8e-11 70.9 65 53.8
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-10 69.7 44 72.7
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 3.4e-10 68.9 55 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 4.4e-10 68.6 60 55.0
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 8.3e-09 64.3 87 48.3
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.8e-08 63.2 68 45.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.0e-07 59.7 43 65.1
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 5.9e-07 58.2 42 61.9
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.9e-07 58.2 39 69.2
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 7.7e-07 57.8 41 63.4
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 8.6e-06 54.3 42 59.5


User provided reference genes

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