Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.W9AXS3 Arachis hypogaea HOM05D006446 ORTHO05D007832 4.2e-270 934.1 469 100.0
arahy.Tifrunner.gnm1.ann1.UR5LFG Arachis hypogaea HOM05D006446 ORTHO05D007832 1.1e-182 643.7 425 80.7
Glyma.17G170400 Glycine max HOM05D006446 ORTHO05D007832 7.2e-113 411.8 436 54.8
Lj4g0016139 Lotus japonicus HOM05D006446 ORTHO05D007832 1.7e-109 400.6 434 55.5
VMungo0251G0310 Vigna mungo HOM05D006446 ORTHO05D007832 3.7e-109 399.4 433 53.6
Lalb_Chr16g0388721 Lupinus albus HOM05D006446 ORTHO05D007832 7.0e-108 395.2 434 54.1
Psat4g085400 Pisum sativum HOM05D006446 ORTHO05D007832 1.0e-106 391.3 349 61.6
Ca_22149_v3 Cicer arietinum L. HOM05D006446 ORTHO05D007832 1.6e-104 384.0 436 54.6
Phvul.003G242000 Phaseolus vulgaris HOM05D006446 ORTHO05D007832 2.3e-103 380.2 433 52.0
Medtr4g094860 Medicago truncatula HOM05D006446 ORTHO05D007832 4.4e-102 375.9 349 59.6
TPR.G14592 Trifolium pratense HOM05D006446 ORTHO05D007832 1.3e-98 364.4 352 58.8
CiPaw.01G015300 Carya illinoinensis HOM05D006446 ORTHO05D007832 1.9e-89 334.0 334 55.1
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.3e-89 332.8 334 54.5
Gorai.008G077700 Gossypium raimondii HOM05D006446 ORTHO05D007832 2.0e-86 323.9 334 53.9
Dinv26843 Davidia involucrata HOM05D006446 ORTHO05D007832 9.8e-86 321.6 334 54.2
Gohir.D12G070700 Gossypium hirsutum HOM05D006446 ORTHO05D007832 3.7e-85 319.7 334 53.3
Cpa.g.sc55.118 Carica papaya HOM05D006446 ORTHO05D007832 4.9e-85 319.3 330 54.8
Gohir.A12G072800 Gossypium hirsutum HOM05D006446 ORTHO05D007832 4.1e-84 316.2 334 52.7
QL06p040688 Quercus lobata HOM05D006446 ORTHO05D007832 1.6e-83 314.3 358 50.8
Ciclev10026145m.g Citrus clementina HOM05D006446 ORTHO05D007832 3.0e-82 310.1 333 52.9
Manes.13G120800 Manihot esculenta HOM05D006446 ORTHO05D007832 6.2e-80 302.4 337 51.3
Cfa004041 Carpinus fangiana HOM05D006446 ORTHO05D007832 3.1e-79 300.1 334 51.2
Atru.chr3.290 Acer truncatum HOM05D006446 ORTHO05D007832 4.0e-79 299.7 334 50.9
GSVIVG01022084001 Vitis vinifera HOM05D006446 ORTHO05D007832 4.4e-78 296.2 336 50.0
Thecc.01G060300 Theobroma cacao HOM05D006446 ORTHO05D007832 1.7e-77 294.3 337 48.4
CANSAT01G1360 Cannabis sativa HOM05D006446 ORTHO05D007832 2.2e-77 293.9 338 50.6
TAR376G0667 Trochodendron aralioides HOM05D006446 ORTHO05D007832 6.4e-77 292.4 334 48.8
ClCG01G016920 Citrullus lanatus HOM05D006446 ORTHO05D007832 1.2e-75 288.1 334 48.5
TWI09G0730 Tripterygium wilfordii HOM05D006446 ORTHO05D007832 1.0e-74 285.0 348 49.1
Hma1.2p1_0017F.1_g011530 Hydrangea macrophylla HOM05D006446 ORTHO05D007832 1.3e-74 284.6 437 44.2
Actinidia36475 Actinidia chinensis HOM05D006446 ORTHO05D007832 2.3e-74 283.9 335 48.7
CARHR280460 Cardamine hirsuta HOM05D006446 ORTHO05D007832 8.6e-74 282.0 335 48.4
AT5G67170 Arabidopsis thaliana HOM05D006446 ORTHO05D007832 1.9e-73 280.8 349 45.6
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 2.5e-73 280.4 378 43.9
Oeu017452.1 Olea europaea HOM05D006446 ORTHO05D007832 1.2e-72 278.1 339 48.4
Sabra05G0110700 Salix brachista HOM05D006446 ORTHO05D007832 1.6e-72 277.7 333 49.2
Hma1.2p1_0017F.1_g011540 Hydrangea macrophylla HOM05D006446 ORTHO05D007832 2.1e-72 277.3 303 52.8
CsaV3_6G043380 Cucumis sativus L. HOM05D006446 ORTHO05D007832 3.6e-72 276.6 334 46.4
Sed0014324 Sechium edule HOM05D006446 ORTHO05D007832 3.6e-72 276.6 334 47.0
MELO3C007571.2 Cucumis melo HOM05D006446 ORTHO05D007832 4.7e-72 276.2 334 46.7
Eucgr.H01696 Eucalyptus grandis HOM05D006446 ORTHO05D007832 8.1e-72 275.4 321 51.1
Peaxi162Scf00685g00014 Petunia axillaris HOM05D006446 ORTHO05D007832 1.8e-71 274.2 347 46.4
Eucgr.H01701 Eucalyptus grandis HOM05D006446 ORTHO05D007832 3.1e-71 273.5 334 50.0
Carub.0008s2734 Capsella rubella HOM05D006446 ORTHO05D007832 5.2e-71 272.7 335 45.4
Cc07_g06190 Coffea canephora HOM05D006446 ORTHO05D007832 8.9e-71 271.9 333 47.1
Nitab4.5_0001169g0030 Nicotiana tabacum HOM05D006446 ORTHO05D007832 8.9e-71 271.9 351 45.3
AL8G44180 Arabidopsis lyrata HOM05D006446 ORTHO05D007832 1.5e-70 271.2 341 47.2
ECA232G4400 Erigeron canadensis HOM05D006446 ORTHO05D007832 2.6e-70 270.4 337 47.2
BraA09t36599Z Brassica rapa HOM05D006446 ORTHO05D007832 5.8e-70 269.2 333 46.5
CAN.G82.26 Capsicum annuum HOM05D006446 ORTHO05D007832 7.6e-70 268.9 355 44.8
C09p11250 Brassica napus HOM05D006446 ORTHO05D007832 1.3e-69 268.1 333 45.6
BcaC04g23194 Brassica carinata HOM05D006446 ORTHO05D007832 2.9e-69 266.9 333 45.3
BolC9t54014H Brassica oleracea HOM05D006446 ORTHO05D007832 2.9e-69 266.9 333 45.3
Duzib147G1565 Durio zibethinus HOM05D006446 ORTHO05D007832 2.9e-69 266.9 340 46.5
A09p09520 Brassica napus HOM05D006446 ORTHO05D007832 4.9e-69 266.2 333 46.2
Nitab4.5_0000333g0110 Nicotiana tabacum HOM05D006446 ORTHO05D007832 1.1e-68 265.0 351 44.2
Eucgr.H02068 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.4e-68 264.6 334 47.9
Migut.H00414 Erythranthe guttata HOM05D006446 ORTHO05D007832 1.9e-68 264.2 351 45.0
Eucgr.H02072 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.9e-68 264.2 289 52.9
Sopen03g008450 Solanum pennellii HOM05D006446 ORTHO05D007832 1.9e-68 264.2 335 45.7
Nn5g30357 Nelumbo nucifera HOM05D006446 ORTHO05D007832 2.4e-68 263.8 334 48.2
Eucgr.H01692 Eucalyptus grandis HOM05D006446 ORTHO05D007832 7.1e-68 262.3 287 51.2
Sp2g29500 Schrenkiella parvula HOM05D006446 ORTHO05D007832 7.1e-68 262.3 339 45.1
Lsat_1_v5_gn_4_165160 Lactuca sativa HOM05D006446 ORTHO05D007832 3.5e-67 260.0 339 47.5
Thhalv10004429m.g Eutrema salsugineum HOM05D006446 ORTHO05D007832 2.3e-66 257.3 320 46.6
MSTRG.23733 Avicennia marina HOM05D006446 ORTHO05D007832 1.5e-65 254.6 301 47.5
ATR0762G017 Amborella trichopoda HOM05D006446 ORTHO05D007832 1.9e-65 254.2 397 41.3
BcaB04g20072 Brassica carinata HOM05D006446 ORTHO05D007832 7.3e-65 252.3 333 44.7
Eucgr.H02080 Eucalyptus grandis HOM05D006446 ORTHO05D007832 2.8e-64 250.4 315 49.5
Rhsim08G0099200 Rhododendron simsii HOM05D006446 ORTHO05D007832 6.2e-64 249.2 390 42.3
vmacro17962 Vaccinium macrocarpon HOM05D006446 ORTHO05D007832 3.1e-63 246.9 373 43.4
DCAR_010875 Daucus carota HOM05D006446 ORTHO05D007832 4.0e-63 246.5 301 47.2
Eucgr.H02065 Eucalyptus grandis HOM05D006446 ORTHO05D007832 9.0e-63 245.4 331 46.8
HanXRQChr15g0490771 Helianthus annuus HOM05D006446 ORTHO05D007832 3.4e-62 243.4 282 49.3
Ah.03g145380 Amaranthus hybridus HOM05D006446 ORTHO05D007832 1.7e-61 241.1 340 42.4
Lj4A152T18 Lonicera japonica HOM05D006446 ORTHO05D007832 1.7e-61 241.1 307 45.3
Solyc03g044370.3 Solanum lycopersicum HOM05D006446 ORTHO05D007832 1.4e-60 238.0 297 46.5
Aqoxy5G01186 Aquilegia oxysepala HOM05D006446 ORTHO05D007832 1.9e-60 237.7 330 45.8
HPP92_014795 Vanilla planifolia HOM05D006446 ORTHO05D007832 6.0e-59 232.6 350 42.6
Aa31LG1G15700 Aethionema arabicum HOM05D006446 ORTHO05D007832 1.7e-58 231.1 308 45.5
Eucgr.H01704 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.7e-58 231.1 336 45.2
Haze_15372 Corylus avellana HOM05D006446 ORTHO05D007832 1.3e-56 224.9 334 43.4
Potri.005G140500 Populus trichocarpa HOM05D006446 ORTHO05D007832 1.4e-55 221.5 261 49.0
unitig_27.g25331 Utricularia gibba HOM05D006446 ORTHO05D007832 1.8e-55 221.1 345 40.9
CDE01G0083 Ceratophyllum demersum HOM05D006446 ORTHO05D007832 8.4e-53 212.2 299 44.5
PGSC0003DMG402034099 Solanum tuberosum HOM05D006446 ORTHO05D007832 4.2e-52 209.9 222 49.5
Pp3c2_9710 Physcomitrium patens HOM05D006446 ORTHO05D007832 1.9e-49 201.1 340 38.2
SGA_v2.0_scaffold143G35805 Striga asiatica HOM05D006446 ORTHO05D007832 9.6e-49 198.7 327 40.7
Eucgr.H01724 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.3e-48 198.4 284 43.7
PSO170G5547 Papaver somniferum HOM05D006446 ORTHO05D007832 1.4e-47 194.9 337 40.4
EL10Ac6g15719 Beta vulgaris HOM05D006446 ORTHO05D007832 1.8e-47 194.5 269 43.5
Eucgr.H01706 Eucalyptus grandis HOM05D006446 ORTHO05D007832 5.3e-47 193.0 334 39.5
AagrBONN_evm.TU.Sc2ySwM_368.596 Anthoceros agrestis HOM05D006446 ORTHO05D007832 9.0e-47 192.2 325 39.1
PSO210G7690 Papaver somniferum HOM05D006446 ORTHO05D007832 6.7e-42 176.0 275 39.6
Zm00001eb066800 Zea mays HOM05D006446 ORTHO05D007832 1.5e-41 174.9 297 37.0
Eucgr.H02059 Eucalyptus grandis HOM05D006446 ORTHO05D007832 7.4e-41 172.6 286 42.3
Pp3c17_8570 Physcomitrium patens HOM05D006446 ORTHO05D007832 1.8e-39 167.9 321 35.2
CSS0048354 Camellia sinensis var. sinensis HOM05D006446 ORTHO05D007832 6.9e-39 166.0 234 44.0
Eucgr.H01733 Eucalyptus grandis HOM05D006446 ORTHO05D007832 2.0e-38 164.5 287 40.8
Eucgr.H02083 Eucalyptus grandis HOM05D006446 ORTHO05D007832 4.5e-38 163.3 262 42.7
Mapoly0012s0095 Marchantia polymorpha HOM05D006446 ORTHO05D007832 8.4e-37 159.1 344 33.4
Hund16350 Selenicereus undatus HOM05D006446 ORTHO05D007832 9.3e-36 155.6 326 35.9
Os04g0670400 Oryza sativa ssp. japonica HOM05D006446 ORTHO05D007832 2.1e-35 154.5 115 60.9
Eucgr.A00813 Eucalyptus grandis HOM05D006446 ORTHO05D007832 2.5e-33 147.5 275 40.4
AUR62003910 Chenopodium quinoa HOM05D006446 ORTHO05D007832 2.2e-29 134.4 389 30.3
Eucgr.H02090 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.3e-24 118.6 198 38.9
Eucgr.H02276 Eucalyptus grandis HOM05D006446 ORTHO05D007832 1.4e-23 115.2 220 39.5
Cre05.g246050 Chlamydomonas reinhardtii HOM05D006446 ORTHO05D007832 1.6e-19 101.7 186 34.9
Cre09.g408825 Chlamydomonas reinhardtii HOM05D006446 ORTHO05D007832 1.6e-19 101.7 186 34.9
MCO10G335 Micromonas commoda HOM05D006446 ORTHO05D007832 2.7e-19 100.9 95 49.5
AUR62001902 Chenopodium quinoa HOM05D006446 ORTHO05D007832 1.0e-18 99.0 196 33.7
Ca_21892_v3 Cicer arietinum L. HOM05D006446 ORTHO05D007832 1.8e-18 98.2 165 43.0
SEGI_09227 Sequoiadendron giganteum HOM05D006446 ORTHO05D007832 1.3e-16 92.0 89 47.2
SEGI_14722 Sequoiadendron giganteum HOM05D006446 ORTHO05D007832 2.0e-14 84.7 251 32.7
Ca_12108_v3 Cicer arietinum L. HOM05D000775 ORTHO05D007832 1.1e-12 79.0 111 42.3
PGSC0003DMG401034099 Solanum tuberosum HOM05D006446 ORTHO05D007832 4.2e-12 77.0 96 46.9
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 7.2e-12 76.3 94 37.2
Ca_02398_v3 Cicer arietinum L. HOM05D006446 ORTHO05D007832 1.7e-08 65.1 69 58.0
Eucgr.H01745 Eucalyptus grandis HOM05D006446 ORTHO05D007832 2.0e-06 58.2 134 39.6


User provided reference genes

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