Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.7e-126 456.1 239 100.0
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 4.8e-121 438.0 237 97.5
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 5.8e-66 255.0 253 60.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 7.8e-63 244.6 225 63.6
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 3.0e-62 242.7 250 58.8
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 5.6e-61 238.4 221 62.9
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 7.3e-61 238.0 253 59.7
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 6.8e-59 231.5 241 60.2
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.2e-58 230.7 258 55.4
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 5.8e-58 228.4 256 53.9
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 9.9e-58 227.6 257 57.6
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 9.2e-56 221.1 262 55.0
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 9.2e-56 221.1 259 55.6
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 1.2e-55 220.7 255 54.9
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 5.1e-54 215.3 241 56.8
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 6.6e-54 214.9 262 51.9
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.2e-52 210.7 254 52.0
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 4.7e-52 208.8 253 56.1
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 5.2e-51 205.3 262 50.8
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 8.9e-51 204.5 256 51.2
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 8.9e-51 204.5 257 53.7
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 1.5e-50 203.8 241 53.9
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 4.4e-50 202.2 244 53.3
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 4.4e-50 202.2 239 54.8
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 7.6e-50 201.4 250 50.4
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.2e-49 199.9 244 52.5
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 4.9e-49 198.7 239 53.6
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 8.4e-49 198.0 204 59.3
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.2e-48 196.1 262 51.5
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 5.4e-48 195.3 261 50.6
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 7.1e-48 194.9 265 49.8
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.1e-47 193.4 258 51.2
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-47 193.0 246 52.8
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 3.5e-47 192.6 262 50.8
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.5e-47 192.6 262 50.8
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 6.0e-47 191.8 261 49.4
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.3e-46 190.7 266 50.8
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 3.0e-46 189.5 249 51.8
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 5.1e-46 188.7 252 48.0
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.6e-46 188.3 237 52.7
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 6.6e-46 188.3 249 51.8
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 6.6e-46 188.3 262 49.2
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.1e-45 187.6 249 51.4
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 1.1e-45 187.6 202 55.4
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 2.5e-45 186.4 246 52.4
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.5e-45 186.4 261 49.8
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 3.3e-45 186.0 260 51.5
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.6e-44 183.7 247 50.6
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.1e-43 181.0 234 48.7
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 1.8e-43 180.3 236 49.6
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.1e-43 179.5 254 49.2
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 5.2e-43 178.7 265 46.8
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 9.0e-43 177.9 227 52.0
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.0e-42 176.8 224 49.1
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 9.9e-42 174.5 224 50.0
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.3e-41 174.1 261 47.5
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 6.4e-41 171.8 195 53.3
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 1.1e-40 171.0 199 52.8
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 1.4e-40 170.6 195 54.4
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 1.9e-40 170.2 167 60.5
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.9e-40 170.2 204 53.4
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 1.9e-40 170.2 233 48.1
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 2.4e-40 169.9 205 55.6
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 3.2e-40 169.5 209 50.7
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 5.4e-40 168.7 239 49.0
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.6e-39 167.2 212 53.8
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 2.1e-39 166.8 207 51.7
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 2.1e-39 166.8 144 63.9
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 1.3e-38 164.1 205 48.3
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.5e-37 160.6 151 62.9
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 5.6e-37 158.7 239 47.7
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 2.1e-36 156.8 238 45.0
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.8e-36 155.6 185 56.2
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 2.4e-35 153.3 208 49.5
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 3.1e-35 152.9 209 47.8
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 3.1e-35 152.9 106 75.5
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 3.1e-35 152.9 106 75.5
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 9.0e-35 151.4 149 59.1
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 9.0e-35 151.4 258 43.8
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.2e-34 151.0 147 57.8
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.2e-34 151.0 133 64.7
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-34 150.2 143 59.4
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 2.0e-34 150.2 143 59.4
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 4.5e-34 149.1 143 59.4
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 4.5e-34 149.1 177 50.3
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 5.8e-34 148.7 195 48.7
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 5.8e-34 148.7 155 56.8
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 5.8e-34 148.7 138 61.6
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 5.8e-34 148.7 141 59.6
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 5.8e-34 148.7 210 49.5
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-33 147.1 114 68.4
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-33 147.1 114 68.4
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.7e-33 147.1 114 68.4
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-33 147.1 143 59.4
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-33 147.1 114 68.4
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 2.2e-33 146.7 147 58.5
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 7.1e-32 141.7 121 63.6
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 1.2e-31 141.0 120 63.3
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.6e-28 130.6 139 57.6
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 8.1e-28 128.3 165 52.1
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 1.2e-26 124.4 177 46.3
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 3.4e-26 122.9 161 48.4
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 9.9e-26 121.3 121 60.3
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.3e-25 120.9 158 50.6
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 7.9e-23 111.7 83 68.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 4.8e-20 102.4 243 36.6
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 3.0e-14 83.2 143 38.5
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 9.7e-13 78.2 198 31.8
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 1.5e-10 70.9 172 34.3


User provided reference genes

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