Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 3.2e-74 281.6 135 100.0
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 3.6e-73 278.1 135 98.5
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 5.7e-63 244.2 135 85.9
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 2.2e-62 242.3 136 85.3
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 1.1e-61 240.0 135 85.2
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 1.4e-61 239.6 135 83.7
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 7.0e-61 237.3 135 82.2
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 9.2e-61 236.9 135 82.2
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 3.4e-55 218.4 135 80.0
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 9.2e-53 210.3 135 75.6
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 1.6e-52 209.5 135 72.6
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 2.7e-52 208.8 135 72.6
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 2.7e-52 208.8 135 73.3
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 4.6e-52 208.0 135 71.1
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 4.6e-52 208.0 135 73.3
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 2.3e-51 205.7 135 70.4
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 3.0e-51 205.3 135 70.4
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.9e-50 202.6 136 71.3
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 2.5e-50 202.2 136 70.6
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 9.5e-50 200.3 135 71.9
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 5.2e-48 194.5 135 69.6
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 2.6e-47 192.2 135 68.9
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 1.3e-46 189.9 135 65.2
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 3.7e-46 188.3 135 65.9
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 4.9e-46 188.0 135 65.2
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 6.4e-46 187.6 135 66.7
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 1.4e-45 186.4 125 73.6
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 2.4e-45 185.7 135 66.7
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 6.0e-44 181.0 138 63.8
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 1.0e-43 180.3 135 63.7
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 1.3e-43 179.9 135 68.1
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 5.6e-42 174.5 139 64.7
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 4.7e-41 171.4 142 62.7
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 6.2e-41 171.0 144 60.4
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 1.1e-40 170.2 139 63.3
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 1.8e-40 169.5 139 61.2
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 5.2e-40 167.9 139 62.6
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 6.8e-40 167.5 139 62.6
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 6.8e-40 167.5 139 62.6
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 1.2e-39 166.8 135 60.0
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 2.6e-39 165.6 135 58.5
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 7.6e-39 164.1 144 59.0
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 1.7e-38 162.9 114 67.5
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 2.9e-38 162.2 117 70.1
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 5.4e-37 157.9 114 66.7
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 1.2e-36 156.8 135 59.3
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 1.2e-36 156.8 132 58.3
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 2.3e-35 152.5 145 55.2
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 1.6e-33 146.4 186 45.7
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 2.1e-33 146.0 114 64.0
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 5.2e-32 141.4 191 47.1
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 1.2e-31 140.2 135 54.1
A09p54260 Brassica napus HOM05D007572 ORTHO05D009535 4.4e-31 138.3 126 57.9
Peaxi162Scf00058g02018 Petunia axillaris HOM05D007572 ORTHO05D009535 1.9e-29 132.9 118 57.6
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 1.9e-29 132.9 135 51.9
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 7.8e-28 127.5 147 48.3
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 2.1e-25 119.4 138 49.3
BcaC07g40711 Brassica carinata HOM05D007572 ORTHO05D009535 2.8e-25 119.0 126 53.2
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 1.2e-23 113.6 172 40.1
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 2.0e-23 112.8 64 79.7
Pp3c17_19540 Physcomitrium patens HOM05D007572 ORTHO05D009535 2.6e-23 112.5 140 49.3
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 4.5e-23 111.7 64 79.7
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 4.5e-23 111.7 92 58.7
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 7.6e-23 110.9 73 72.6
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 1.3e-22 110.2 79 64.6
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 3.8e-22 108.6 64 75.0
QL12p034502 Quercus lobata HOM05D007572 ORTHO05D009535 5.4e-21 104.8 72 72.2
Thecc.01G323600 Theobroma cacao HOM05D007572 ORTHO05D009535 9.3e-21 104.0 75 61.3
Gorai.001G147500 Gossypium raimondii HOM05D007572 ORTHO05D009535 3.5e-20 102.1 85 58.8
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 4.6e-20 101.7 64 68.8
AagrBONN_evm.TU.Sc2ySwM_228.110 Anthoceros agrestis HOM05D007572 ORTHO05D009535 6.0e-20 101.3 138 42.0
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 6.7e-19 97.8 64 67.2
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 6.7e-19 97.8 53 81.1
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 9.6e-18 94.0 66 68.2
ClCG11G013240 Citrullus lanatus HOM05D007572 ORTHO05D009535 3.6e-17 92.0 55 74.5
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 6.2e-17 91.3 54 75.9
GSVIVG01028266001 Vitis vinifera HOM05D007572 ORTHO05D009535 1.1e-16 90.5 64 67.2
Glyma.19G220500 Glycine max HOM05D007572 ORTHO05D009535 1.4e-16 90.1 142 43.0
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 1.8e-16 89.7 62 69.4
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 5.3e-16 88.2 78 56.4
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 1.2e-15 87.0 66 57.6
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.5e-15 86.7 64 60.9
Ciclev10024492m.g Citrus clementina HOM05D007572 ORTHO05D009535 2.0e-15 86.3 48 79.2
GSVIVG01028267001 Vitis vinifera HOM05D007572 ORTHO05D009535 2.0e-15 86.3 73 54.8
Ciclev10023453m.g Citrus clementina HOM05D007572 ORTHO05D009535 5.8e-15 84.7 53 71.7
CBR_g88332 Chara braunii HOM05D007572 ORTHO05D009535 2.2e-14 82.8 161 31.7
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 3.8e-14 82.0 51 70.6
SEGI_13004 Sequoiadendron giganteum HOM05D007572 ORTHO05D009535 3.2e-13 79.0 76 52.6
CARHR172530 Cardamine hirsuta HOM05D007572 ORTHO05D009535 4.2e-13 78.6 67 55.2
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 9.3e-13 77.4 46 76.1
TAR636G1955 Trochodendron aralioides HOM05D007572 ORTHO05D009535 1.6e-12 76.6 56 62.5
BcaB07g33721 Brassica carinata HOM05D007572 ORTHO05D009535 1.8e-11 73.2 65 55.4
Os07g0637100 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 5.6e-10 68.2 54 57.4
Gohir.A12G120600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 7.4e-10 67.8 55 61.8
Os07g0637150 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 6.2e-09 64.7 55 58.2
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 8.2e-09 64.3 47 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2777 Anthoceros agrestis HOM05D007572 ORTHO05D009535 2.4e-08 62.8 66 48.5
Atru.chr5.886 Acer truncatum HOM05D007572 ORTHO05D009535 2.9e-06 55.8 60 46.7
Atru.chr5.889 Acer truncatum HOM05D007572 ORTHO05D009535 2.9e-06 55.8 60 46.7
TAR365G0305 Trochodendron aralioides HOM05D007572 ORTHO05D009535 4.9e-06 55.1 47 59.6
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 8.4e-06 54.3 80 42.5


User provided reference genes

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