Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.W5G7HT Arachis hypogaea HOM05D002852 ORTHO05D026880 1.2e-29 132.5 67 100.0
Lj3g0020242 Lotus japonicus HOM05D002852 ORTHO05D003174 2.2e-15 85.1 54 72.2
arahy.Tifrunner.gnm1.ann1.0756ZF Arachis hypogaea HOM05D002852 ORTHO05D003174 3.8e-15 84.3 50 82.0
Glyma.08G123200 Glycine max HOM05D002852 ORTHO05D003174 2.4e-14 81.6 54 70.4
Phvul.006G181000 Phaseolus vulgaris HOM05D002852 ORTHO05D003174 3.5e-13 77.8 54 66.7
Psat2g160520 Pisum sativum HOM05D002852 ORTHO05D003174 6.0e-13 77.0 54 64.8
VMungo0540G0105 Vigna mungo HOM05D000365 ORTHO05D000154 7.9e-13 76.6 54 61.1
Glyma.13G234000 Glycine max HOM05D002852 ORTHO05D003174 1.0e-12 76.3 54 61.1
Cc09_g09640 Coffea canephora HOM05D002852 ORTHO05D003174 1.3e-12 75.9 54 64.8
Glyma.15G079000 Glycine max HOM05D002852 ORTHO05D003174 2.3e-12 75.1 54 61.1
Lalb_Chr07g0185971 Lupinus albus HOM05D002852 ORTHO05D003174 3.0e-12 74.7 54 63.0
Lalb_Chr18g0057671 Lupinus albus HOM05D002852 ORTHO05D003174 5.1e-12 73.9 54 61.1
TPR.G28689 Trifolium pratense HOM05D002852 ORTHO05D003174 5.1e-12 73.9 54 64.8
Haze_05528 Corylus avellana HOM05D002852 ORTHO05D003174 8.7e-12 73.2 54 63.0
Medtr5g019990 Medicago truncatula HOM05D002852 ORTHO05D003174 1.9e-11 72.0 54 61.1
Phvul.002G245900 Phaseolus vulgaris HOM05D002852 ORTHO05D003174 1.9e-11 72.0 54 64.8
Dinv30699 Davidia involucrata HOM05D002852 ORTHO05D003174 2.5e-11 71.6 54 63.0
VMungo0251G1443 Vigna mungo HOM05D002852 ORTHO05D003174 3.3e-11 71.2 54 59.3
Psat5g176040 Pisum sativum HOM05D002852 ORTHO05D003174 4.3e-11 70.9 53 58.5
TAR629G1486 Trochodendron aralioides HOM05D002852 ORTHO05D003174 4.3e-11 70.9 54 63.0
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 7.4e-11 70.1 54 59.3
Sed0017870 Sechium edule HOM05D002852 ORTHO05D003174 9.6e-11 69.7 54 57.4
TWI09G0466 Tripterygium wilfordii HOM05D002852 ORTHO05D003174 1.3e-10 69.3 54 59.3
Aqoxy1G03406 Aquilegia oxysepala HOM05D002852 ORTHO05D003174 1.6e-10 68.9 54 55.6
Aqoxy4G00122 Aquilegia oxysepala HOM05D002852 ORTHO05D003174 1.6e-10 68.9 54 57.4
Ciclev10016856m.g Citrus clementina HOM05D002852 ORTHO05D003174 1.6e-10 68.9 54 61.1
FvH4_3g06270 Fragaria vesca HOM05D002852 ORTHO05D003174 2.1e-10 68.6 54 55.6
FAN11G1812 Fragaria x ananassa HOM05D002852 ORTHO05D003174 2.1e-10 68.6 54 55.6
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.1e-10 68.6 54 55.6
FAN25G3015 Fragaria x ananassa HOM05D002852 ORTHO05D003174 2.1e-10 68.6 54 55.6
RcHm_v2.0_Chr5g0013041 Rosa chinensis HOM05D002852 ORTHO05D003174 2.1e-10 68.6 54 55.6
HPP92_023828 Vanilla planifolia HOM05D003185 ORTHO05D009915 2.1e-10 68.6 54 55.6
Aqoxy5G03029 Aquilegia oxysepala HOM05D003001 ORTHO05D003174 4.8e-10 67.4 56 51.8
Duzib235G1049 Durio zibethinus HOM05D002852 ORTHO05D003174 4.8e-10 67.4 54 59.3
MD05G1290700 Malus domestica HOM05D002852 ORTHO05D003174 4.8e-10 67.4 54 61.1
PSO541G5486 Papaver somniferum HOM05D002852 ORTHO05D003174 4.8e-10 67.4 53 60.4
PSO675G8025 Papaver somniferum HOM05D002852 ORTHO05D003174 4.8e-10 67.4 53 60.4
Sopen02g002390 Solanum pennellii HOM05D002852 ORTHO05D003174 4.8e-10 67.4 54 61.1
Lj1A1183T67 Lonicera japonica HOM05D002852 ORTHO05D003174 6.2e-10 67.0 54 57.4
SalBow7G2051 Salvia bowleyana HOM05D002852 ORTHO05D003174 6.2e-10 67.0 54 57.4
CAN.G5.6 Capsicum annuum HOM05D002852 ORTHO05D003174 8.2e-10 66.6 54 59.3
Nn3g20869 Nelumbo nucifera HOM05D002852 ORTHO05D003174 8.2e-10 66.6 54 61.1
Oeu014550.1 Olea europaea HOM05D002852 ORTHO05D003174 8.2e-10 66.6 54 59.3
Solyc02g005510.4 Solanum lycopersicum HOM05D002852 ORTHO05D003174 8.2e-10 66.6 54 59.3
SGA_v2.0_scaffold106G30623 Striga asiatica HOM05D002852 ORTHO05D003174 1.1e-09 66.2 54 57.4
unitig_61.g26021 Utricularia gibba HOM05D002852 ORTHO05D003174 1.1e-09 66.2 54 57.4
arahy.Tifrunner.gnm1.ann1.8ZRS2Y Arachis hypogaea HOM05D002852 ORTHO05D003174 1.4e-09 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.PI7FGC Arachis hypogaea HOM05D002852 ORTHO05D003174 1.4e-09 65.9 40 80.0
Peaxi162Scf00121g02434 Petunia axillaris HOM05D002852 ORTHO05D003174 1.8e-09 65.5 54 59.3
Prupe.4G075000 Prunus persica HOM05D002852 ORTHO05D003174 1.8e-09 65.5 54 57.4
GSVIVG01021392001 Vitis vinifera HOM05D002852 ORTHO05D003174 1.8e-09 65.5 54 59.3
Gohir.A06G135700 Gossypium hirsutum HOM05D002852 ORTHO05D003174 3.1e-09 64.7 54 53.7
Gohir.D06G141000 Gossypium hirsutum HOM05D002852 ORTHO05D003174 3.1e-09 64.7 54 53.7
Gorai.010G164400 Gossypium raimondii HOM05D002852 ORTHO05D003174 3.1e-09 64.7 54 53.7
HPP92_023893 Vanilla planifolia HOM05D002852 ORTHO05D003174 3.1e-09 64.7 54 53.7
ATR0767G199 Amborella trichopoda HOM05D002852 ORTHO05D003174 4.0e-09 64.3 54 55.6
CANSAT35G1426 Cannabis sativa HOM05D002852 ORTHO05D003174 4.0e-09 64.3 54 55.6
ClCG01G024310 Citrullus lanatus HOM05D002096 ORTHO05D002203 5.3e-09 63.9 54 51.9
MELO3C007160.2 Cucumis melo HOM05D002852 ORTHO05D003174 5.3e-09 63.9 54 53.7
Eucgr.L02251 Eucalyptus grandis HOM05D002852 ORTHO05D003174 5.3e-09 63.9 54 53.7
Rhsim12G0042800 Rhododendron simsii HOM05D002852 ORTHO05D003174 5.3e-09 63.9 54 57.4
Atru.chr10.1370 Acer truncatum HOM05D002852 ORTHO05D003174 6.9e-09 63.5 54 55.6
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 6.9e-09 63.5 54 55.6
CSS0022788 Camellia sinensis var. sinensis HOM05D002852 ORTHO05D003174 6.9e-09 63.5 54 57.4
Migut.H01385 Erythranthe guttata HOM05D002852 ORTHO05D003174 6.9e-09 63.5 55 56.4
Lsat_1_v5_gn_1_113160 Lactuca sativa HOM05D002852 ORTHO05D003174 6.9e-09 63.5 54 57.4
Thecc.06G156400 Theobroma cacao HOM05D002852 ORTHO05D003174 6.9e-09 63.5 54 53.7
Eucgr.E02363 Eucalyptus grandis HOM05D002852 ORTHO05D003174 9.0e-09 63.2 54 53.7
Oeu001051.1 Olea europaea HOM05D002852 ORTHO05D003174 9.0e-09 63.2 59 54.2
Potri.011G078900 Populus trichocarpa HOM05D002852 ORTHO05D003174 9.0e-09 63.2 54 53.7
Rhsim12G0043000 Rhododendron simsii HOM05D002852 ORTHO05D003174 9.0e-09 63.2 54 55.6
TWI73G0510 Tripterygium wilfordii HOM05D002852 ORTHO05D003174 9.0e-09 63.2 54 53.7
MSTRG.13244 Avicennia marina HOM05D002852 ORTHO05D003174 1.2e-08 62.8 54 55.6
Duzib101G0002 Durio zibethinus HOM05D002852 ORTHO05D003174 1.2e-08 62.8 54 53.7
Duzib192G0410 Durio zibethinus HOM05D002852 ORTHO05D003174 1.2e-08 62.8 54 53.7
QL05p060145 Quercus lobata HOM05D002852 ORTHO05D003174 1.2e-08 62.8 54 51.9
Carub.0001s2806 Capsella rubella HOM05D002852 ORTHO05D003174 2.0e-08 62.0 54 53.7
ECA248G1216 Erigeron canadensis HOM05D002852 ORTHO05D003174 2.0e-08 62.0 54 53.7
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 2.6e-08 61.6 54 53.7
COL.COLO4_07489 Corchorus olitorius HOM05D002852 ORTHO05D003174 2.6e-08 61.6 54 51.9
EL10Ac8g19778 Beta vulgaris HOM05D002852 ORTHO05D003174 3.4e-08 61.2 54 53.7
CsaV3_6G051460 Cucumis sativus L. HOM05D002852 ORTHO05D003174 3.4e-08 61.2 53 50.9
QL05p060101 Quercus lobata HOM05D002852 ORTHO05D003174 3.4e-08 61.2 54 50.0
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 4.5e-08 60.8 54 55.6
MD16G1203200 Malus domestica HOM05D002852 ORTHO05D003174 4.5e-08 60.8 54 55.6
Manes.15G117900 Manihot esculenta HOM05D002852 ORTHO05D003174 4.5e-08 60.8 54 51.9
PGR042G3089 Punica granatum HOM05D002852 ORTHO05D003174 4.5e-08 60.8 54 51.9
CiPaw.10G094100 Carya illinoinensis HOM05D002852 ORTHO05D003174 5.8e-08 60.5 54 53.7
Zm00001eb157590 Zea mays HOM05D002852 ORTHO05D003174 5.8e-08 60.5 54 51.9
AL1G43650 Arabidopsis lyrata HOM05D002852 ORTHO05D003174 7.6e-08 60.1 54 51.9
THA.LOC104812660 Tarenaya hassleriana HOM05D002852 ORTHO05D003174 1.0e-07 59.7 54 51.9
TAR627G0278 Trochodendron aralioides HOM05D002852 ORTHO05D003174 1.0e-07 59.7 54 53.7
BcaC05g26996 Brassica carinata HOM05D002852 ORTHO05D003174 1.7e-07 58.9 54 51.9
C05p28560 Brassica napus HOM05D002852 ORTHO05D003174 1.7e-07 58.9 54 51.9
BolC5t31580H Brassica oleracea HOM05D002852 ORTHO05D003174 1.7e-07 58.9 54 51.9
MBI10_g42734_MAGBIO Magnolia biondii HOM05D002852 ORTHO05D003174 1.7e-07 58.9 54 51.9
Aa31LG6G5800 Aethionema arabicum HOM05D002852 ORTHO05D003174 2.2e-07 58.5 54 48.1
AT1G29810 Arabidopsis thaliana HOM05D002852 ORTHO05D003174 2.2e-07 58.5 54 50.0
CARHR029620 Cardamine hirsuta HOM05D002852 ORTHO05D003174 2.2e-07 58.5 54 51.9
CDE04G0442 Ceratophyllum demersum HOM05D002852 ORTHO05D003174 2.2e-07 58.5 55 49.1
AUR62027571 Chenopodium quinoa HOM05D002852 ORTHO05D003174 2.9e-07 58.2 54 51.9
Potri.001G352800 Populus trichocarpa HOM05D002852 ORTHO05D003174 2.9e-07 58.2 54 50.0
A09p36650 Brassica napus HOM05D002852 ORTHO05D003174 3.8e-07 57.8 54 51.9
AUR62035788 Chenopodium quinoa HOM05D002852 ORTHO05D003174 3.8e-07 57.8 54 51.9
BraA09t39184Z Brassica rapa HOM05D002852 ORTHO05D003174 4.9e-07 57.4 54 50.0
CDE07G0019 Ceratophyllum demersum HOM05D002852 ORTHO05D003174 4.9e-07 57.4 54 51.9
Atru.chr2.1238 Acer truncatum HOM05D002852 ORTHO05D003174 6.5e-07 57.0 39 66.7
BcaB07g32569 Brassica carinata HOM05D002852 ORTHO05D003174 6.5e-07 57.0 54 50.0
FAN16G1311 Fragaria x ananassa HOM05D002852 ORTHO05D003174 6.5e-07 57.0 42 57.1
Nitab4.5_0000206g0170 Nicotiana tabacum HOM05D002852 ORTHO05D003174 6.5e-07 57.0 54 50.0
arahy.Tifrunner.gnm1.ann1.RB2TUX Arachis hypogaea HOM05D002852 ORTHO05D003174 8.4e-07 56.6 55 58.2
Thhalv10008867m.g Eutrema salsugineum HOM05D002852 ORTHO05D003174 8.4e-07 56.6 54 51.9
Sc24g0001810 Simmondsia chinensis HOM05D002852 ORTHO05D003174 8.4e-07 56.6 54 50.0
Aa31LG6G5790 Aethionema arabicum HOM05D002852 ORTHO05D003174 1.9e-06 55.5 53 45.3
Sp1g25710 Schrenkiella parvula HOM05D002852 ORTHO05D003174 1.9e-06 55.5 54 50.0
SEGI_33155 Sequoiadendron giganteum HOM05D002852 ORTHO05D003174 2.5e-06 55.1 54 50.0
arahy.Tifrunner.gnm1.ann1.7S2LJQ Arachis hypogaea HOM05D002852 ORTHO05D026880 4.2e-06 54.3 55 56.4
arahy.Tifrunner.gnm1.ann1.Q66JQI Arachis hypogaea HOM05D002852 ORTHO05D026880 9.3e-06 53.1 55 58.2
Os01g0663500 Oryza sativa ssp. japonica HOM05D002852 ORTHO05D003174 9.3e-06 53.1 54 48.1


User provided reference genes

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