Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.W4YZP5 Arachis hypogaea HOM05D003605 ORTHO05D004292 4.2e-49 197.6 93 100.0
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 6.6e-26 120.6 74 79.7
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 5.6e-25 117.5 59 91.5
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 3.1e-23 111.7 59 84.7
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 3.1e-23 111.7 59 84.7
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 5.2e-23 110.9 59 83.1
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 8.9e-23 110.2 59 83.1
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 1.5e-22 109.4 59 84.7
Aqoxy5G00902 Aquilegia oxysepala HOM05D003605 ORTHO05D004292 2.6e-22 108.6 73 68.5
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 3.4e-22 108.2 59 83.1
arahy.Tifrunner.gnm1.ann1.T2CRY6 Arachis hypogaea HOM05D003605 ORTHO05D004292 4.4e-22 107.8 59 84.7
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.4e-22 107.8 59 81.4
arahy.Tifrunner.gnm1.ann1.0BA9QN Arachis hypogaea HOM05D003605 ORTHO05D004292 7.6e-22 107.1 59 83.1
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 9.9e-22 106.7 64 76.6
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 9.9e-22 106.7 59 83.1
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 1.3e-21 106.3 59 81.4
Lalb_Chr13g0296061 Lupinus albus HOM05D003605 ORTHO05D004292 1.7e-21 105.9 59 81.4
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 1.7e-21 105.9 59 79.7
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 2.2e-21 105.5 59 81.4
CSS0014678 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 2.9e-21 105.1 75 64.0
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 3.7e-21 104.8 59 76.3
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 3.7e-21 104.8 59 76.3
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 3.7e-21 104.8 59 81.4
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 3.7e-21 104.8 59 81.4
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.9e-21 104.4 59 76.3
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 4.9e-21 104.4 59 81.4
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 6.4e-21 104.0 59 79.7
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 6.4e-21 104.0 73 68.5
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 6.4e-21 104.0 59 79.7
QL93p0171_0010 Quercus lobata HOM05D003605 ORTHO05D004292 6.4e-21 104.0 59 79.7
Gohir.A13G028300 Gossypium hirsutum HOM05D003605 ORTHO05D004292 8.4e-21 103.6 59 79.7
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 8.4e-21 103.6 59 76.3
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 1.1e-20 103.2 74 68.9
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 1.1e-20 103.2 59 79.7
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 1.4e-20 102.8 59 78.0
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 1.4e-20 102.8 74 67.6
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 1.4e-20 102.8 59 79.7
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 1.4e-20 102.8 59 78.0
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 1.9e-20 102.4 74 68.9
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 1.9e-20 102.4 59 76.3
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.9e-20 102.4 59 79.7
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.9e-20 102.4 59 79.7
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 2.4e-20 102.1 59 74.6
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 2.4e-20 102.1 59 78.0
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 2.4e-20 102.1 59 76.3
GSVIVG01022161001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.4e-20 102.1 59 79.7
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 3.2e-20 101.7 74 67.6
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 3.2e-20 101.7 59 78.0
Duzib187G1314 Durio zibethinus HOM05D003605 ORTHO05D004292 4.1e-20 101.3 61 77.0
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 4.1e-20 101.3 59 79.7
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 4.1e-20 101.3 59 74.6
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 4.1e-20 101.3 59 76.3
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 5.4e-20 100.9 59 78.0
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 5.4e-20 100.9 59 78.0
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 5.4e-20 100.9 59 76.3
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 5.4e-20 100.9 59 78.0
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 7.1e-20 100.5 59 74.6
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 7.1e-20 100.5 88 59.1
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 7.1e-20 100.5 59 78.0
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 7.1e-20 100.5 59 78.0
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 9.2e-20 100.1 59 74.6
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 9.2e-20 100.1 59 74.6
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 9.2e-20 100.1 59 76.3
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 9.2e-20 100.1 59 79.7
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 1.2e-19 99.8 59 78.0
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 1.2e-19 99.8 59 74.6
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 1.6e-19 99.4 59 76.3
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 1.6e-19 99.4 59 78.0
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 1.6e-19 99.4 59 74.6
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.1e-19 99.0 74 64.9
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.1e-19 99.0 74 64.9
FAN23G1157 Fragaria x ananassa HOM05D003605 ORTHO05D004292 2.1e-19 99.0 59 72.9
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.1e-19 99.0 74 66.2
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 2.1e-19 99.0 74 66.2
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.1e-19 99.0 59 76.3
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 64.9
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 2.7e-19 98.6 59 72.9
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 2.7e-19 98.6 76 65.8
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 2.7e-19 98.6 74 66.2
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 2.7e-19 98.6 59 74.6
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 3.5e-19 98.2 59 72.9
Oeu040712.1 Olea europaea HOM05D003605 ORTHO05D004292 3.5e-19 98.2 75 64.0
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 3.5e-19 98.2 59 72.9
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 4.6e-19 97.8 59 71.2
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 4.6e-19 97.8 74 66.2
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 6.0e-19 97.4 59 74.6
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 7.8e-19 97.1 59 74.6
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 7.8e-19 97.1 62 67.7
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 7.8e-19 97.1 74 64.9
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 7.8e-19 97.1 74 66.2
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 1.0e-18 96.7 73 64.4
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.0e-18 96.7 59 71.2
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 1.0e-18 96.7 74 64.9
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 1.3e-18 96.3 59 78.0
Oeu034199.1 Olea europaea HOM05D003605 ORTHO05D004292 1.3e-18 96.3 59 74.6
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 1.7e-18 95.9 59 78.0
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 1.7e-18 95.9 59 72.9
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.7e-18 95.9 59 71.2
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.3e-18 95.5 59 78.0
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 2.3e-18 95.5 59 76.3
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 2.3e-18 95.5 59 72.9
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 3.0e-18 95.1 59 72.9
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 3.0e-18 95.1 59 71.2
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 3.0e-18 95.1 59 76.3
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 3.9e-18 94.7 59 76.3
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 3.9e-18 94.7 74 64.9
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 3.9e-18 94.7 74 63.5
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 5.1e-18 94.4 59 76.3
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 5.1e-18 94.4 59 71.2
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 5.1e-18 94.4 59 67.8
A04p16770 Brassica napus HOM05D003605 ORTHO05D004292 6.6e-18 94.0 59 74.6
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 6.6e-18 94.0 67 67.2
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 1.1e-17 93.2 59 72.9
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 1.1e-17 93.2 74 62.2
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 1.1e-17 93.2 59 76.3
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 1.1e-17 93.2 59 72.9
SGA_v2.0_scaffold47G17751 Striga asiatica HOM05D003605 ORTHO05D004292 1.1e-17 93.2 57 73.7
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 1.1e-17 93.2 59 71.2
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 1.5e-17 92.8 59 76.3
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 1.5e-17 92.8 73 63.0
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 1.5e-17 92.8 59 74.6
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 3.3e-17 91.7 59 67.8
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 3.3e-17 91.7 59 66.1
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 3.3e-17 91.7 59 72.9
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 4.3e-17 91.3 59 69.5
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 5.6e-17 90.9 59 74.6
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 5.6e-17 90.9 59 69.5
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 7.3e-17 90.5 59 69.5
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 9.6e-17 90.1 59 72.9
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.6e-16 89.4 59 67.8
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.8e-16 88.6 59 71.2
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 6.2e-16 87.4 62 58.1
SEGI_31864 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 5.2e-15 84.3 59 64.4
arahy.Tifrunner.gnm1.ann1.SX68AT Arachis hypogaea HOM05D003605 ORTHO05D004292 8.9e-15 83.6 66 66.7
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 2.0e-14 82.4 59 59.3
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 5.8e-14 80.9 59 62.7
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 8.4e-13 77.0 55 60.0
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 4.2e-12 74.7 48 68.8
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 7.1e-12 73.9 59 52.5
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 3.9e-10 68.2 58 48.3
HanXRQChr09g0260231 Helianthus annuus HOM05D003605 ORTHO05D004292 1.3e-08 63.2 39 69.2
MCO16G531 Micromonas commoda HOM05D003605 ORTHO05D004292 6.2e-08 60.8 61 47.5
vmacro09115 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 4.4e-06 54.7 73 45.2
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 5.8e-06 54.3 61 36.1


User provided reference genes

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