Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.3e-193 678.7 344 100.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.1e-190 666.8 345 96.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 4.3e-163 578.2 349 84.0
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 5.8e-160 567.8 344 83.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 3.7e-159 565.1 357 80.4
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 4.9e-159 564.7 341 82.7
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.9e-156 555.1 342 81.0
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.3e-155 550.8 342 81.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.1e-154 549.3 343 80.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 6.8e-153 544.3 342 78.1
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.6e-152 542.3 343 77.6
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 5.8e-152 541.2 348 81.0
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.4e-151 537.7 344 80.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.2e-150 535.0 342 79.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.6e-149 531.6 334 78.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 2.3e-148 529.3 341 76.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.9e-147 526.2 348 76.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.3e-147 525.0 309 82.5
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.6e-147 524.6 344 75.9
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 5.6e-147 524.6 334 76.9
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 7.3e-147 524.2 346 74.6
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.6e-146 523.1 342 76.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.6e-146 521.9 342 75.7
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 3.6e-146 521.9 358 74.3
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 8.1e-146 520.8 336 76.8
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-145 519.6 348 73.9
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 5.3e-145 518.1 341 75.4
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.0e-144 516.2 348 74.1
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.0e-144 516.2 348 74.1
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.0e-144 516.2 344 74.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.4e-144 515.4 336 76.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.8e-144 514.6 342 74.3
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.7e-143 513.1 348 73.3
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.9e-143 512.3 343 73.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.4e-143 511.1 348 72.7
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 8.4e-143 510.8 343 73.5
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.9e-142 509.6 345 73.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.2e-142 508.8 335 75.5
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 7.1e-142 507.7 343 72.6
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 2.1e-141 506.1 348 72.1
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.1e-141 506.1 334 77.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 8.7e-140 500.7 267 86.1
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.5e-139 500.0 270 85.2
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.5e-139 499.2 335 73.4
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 9.6e-139 497.3 339 71.4
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.3e-138 496.9 344 70.6
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-138 496.9 346 70.2
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 8.1e-138 494.2 341 71.0
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.4e-137 493.4 340 70.6
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.8e-137 493.0 344 69.8
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.8e-137 493.0 267 85.4
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-137 492.7 341 70.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.1e-137 492.3 310 76.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 4.0e-137 491.9 341 70.1
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 4.0e-137 491.9 341 70.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 4.0e-137 491.9 342 73.4
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 4.0e-137 491.9 334 72.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 4.0e-137 491.9 307 76.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 4.0e-137 491.9 341 70.7
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 5.3e-137 491.5 263 86.7
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.5e-136 490.0 337 70.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-136 489.6 339 71.7
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-136 489.6 339 71.7
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.0e-136 489.6 341 71.6
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.0e-136 489.6 290 79.3
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 5.8e-136 488.0 340 71.2
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 5.8e-136 488.0 345 71.9
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 7.6e-136 487.6 337 70.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 7.6e-136 487.6 341 71.3
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 7.6e-136 487.6 348 70.1
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 7.6e-136 487.6 325 74.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-135 486.9 342 70.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.3e-135 486.9 340 70.9
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.2e-135 486.1 344 74.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.9e-135 485.7 341 69.5
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.8e-135 485.3 342 69.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.8e-135 485.3 340 70.6
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.8e-135 485.3 342 70.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 4.9e-135 485.0 263 84.8
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 6.4e-135 484.6 346 69.4
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 6.4e-135 484.6 279 81.0
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 6.4e-135 484.6 344 73.8
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 6.4e-135 484.6 285 80.4
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.1e-134 483.8 266 83.5
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.9e-134 483.0 266 83.5
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.4e-134 482.6 266 83.1
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-134 482.3 274 81.8
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.1e-134 481.1 336 70.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.3e-134 480.7 268 83.6
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.6e-133 479.9 342 68.7
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.1e-133 479.6 336 70.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.5e-133 478.8 263 84.0
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 3.5e-133 478.8 334 73.7
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.6e-133 478.4 274 81.0
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.0e-133 478.0 334 69.8
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 7.9e-133 477.6 269 84.0
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.0e-132 477.2 334 71.9
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.3e-132 476.1 342 69.6
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.0e-132 475.7 338 70.1
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-131 472.6 271 81.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 7.4e-131 471.1 339 69.9
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.8e-130 469.2 339 69.3
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.7e-130 468.8 335 69.9
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 3.7e-130 468.8 333 72.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 6.2e-130 468.0 339 69.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.0e-129 465.3 260 81.2
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 4.0e-129 465.3 337 71.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.5e-128 463.4 345 68.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-128 463.4 324 69.1
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.3e-127 460.3 242 87.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.4e-126 456.8 264 79.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 7.9e-125 451.1 266 80.1
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.3e-124 449.5 242 85.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.5e-123 446.0 233 88.4
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.7e-123 444.9 340 65.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 3.7e-122 442.2 344 64.2
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.1e-121 440.7 264 78.0
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.3e-119 433.7 217 91.2
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 5.5e-118 428.3 255 82.4
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.2e-117 427.2 268 75.7
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.1e-117 426.4 270 75.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-115 420.2 216 88.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.9e-115 419.9 341 61.3
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.8e-113 413.3 219 85.4
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 5.9e-112 408.3 221 84.6
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.3e-111 407.1 228 84.2
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.4e-110 403.7 217 83.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 6.7e-108 394.8 266 71.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.0e-107 393.3 339 60.2
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.4e-105 386.3 341 59.8
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-105 385.6 208 85.1
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 8.8e-100 367.9 217 76.5
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 5.0e-95 352.1 331 54.4
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 8.5e-95 351.3 302 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 5.5e-94 348.6 263 64.6
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-87 327.4 237 69.2
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.8e-82 309.7 233 62.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-77 294.3 151 88.7
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.6e-77 293.9 154 86.4
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 7.5e-75 285.0 221 64.3
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 5.4e-73 278.9 217 65.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.0e-72 276.9 219 64.8
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.8e-71 272.7 176 72.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.1e-69 266.9 163 74.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.8e-68 263.8 223 65.5
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 6.4e-58 228.8 129 79.8
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.4e-52 211.1 147 68.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 7.3e-38 162.2 181 51.4
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.1e-20 105.1 123 50.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.7e-18 97.8 81 59.3
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.8e-18 96.7 127 48.0
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-14 85.1 49 73.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.8e-12 77.8 129 40.3


User provided reference genes

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