Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VP4GDR Arachis hypogaea HOM05D007157 ORTHO05D009045 7.8e-291 1003.4 650 100.0
arahy.Tifrunner.gnm1.ann1.LR7EIQ Arachis hypogaea HOM05D007157 ORTHO05D009045 7.8e-283 976.9 648 97.8
Glyma.16G053700 Glycine max HOM05D007157 ORTHO05D009045 1.2e-174 617.5 638 72.6
Lalb_Chr00c01g0403821 Lupinus albus HOM05D007157 ORTHO05D009045 9.5e-172 607.8 643 71.1
VMungo1383G0567 Vigna mungo HOM05D007157 ORTHO05D009045 1.1e-164 584.3 636 68.2
Lj1g0010660 Lotus japonicus HOM05D007157 ORTHO05D009045 1.5e-156 557.4 657 64.1
TPR.G8553 Trifolium pratense HOM05D007157 ORTHO05D009045 1.3e-147 527.7 639 65.1
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 1.2e-145 521.2 635 59.7
Medtr7g027940 Medicago truncatula HOM05D007157 ORTHO05D009045 3.8e-144 516.2 637 63.9
FAN05G0711 Fragaria x ananassa HOM05D007157 ORTHO05D009045 7.1e-143 511.9 631 62.3
FvH4_6g53850 Fragaria vesca HOM05D007157 ORTHO05D009045 1.2e-142 511.1 631 62.1
FAN14G2967 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.2e-142 511.1 631 62.1
Haze_14901 Corylus avellana HOM05D007157 ORTHO05D009045 4.6e-142 509.2 639 62.8
RcHm_v2.0_Chr2g0175991 Rosa chinensis HOM05D007157 ORTHO05D009045 1.8e-141 507.3 631 61.5
Cfa007204 Carpinus fangiana HOM05D007157 ORTHO05D009045 3.9e-141 506.1 639 63.2
TPR.G29476 Trifolium pratense HOM05D007157 ORTHO05D009045 7.4e-140 501.9 654 59.2
Prupe.3G308900 Prunus persica HOM05D007157 ORTHO05D009045 9.6e-140 501.5 635 60.9
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 3.8e-136 489.6 632 61.7
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 9.6e-132 474.9 633 63.2
Atru.chr6.2599 Acer truncatum HOM05D007157 ORTHO05D009045 2.1e-131 473.8 636 62.4
Glyma.19G095500 Glycine max HOM05D007157 ORTHO05D009045 2.1e-131 473.8 575 56.2
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 4.0e-130 469.5 639 62.4
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 4.0e-130 469.5 639 62.4
Rhsim10G0004500 Rhododendron simsii HOM05D007157 ORTHO05D009045 1.5e-129 467.6 638 59.6
Dinv25644 Davidia involucrata HOM05D007157 ORTHO05D009045 2.6e-129 466.8 638 61.3
Phvul.001G089400 Phaseolus vulgaris HOM05D007157 ORTHO05D009045 2.6e-129 466.8 401 61.3
Manes.04G088300 Manihot esculenta HOM05D007157 ORTHO05D009045 3.2e-127 459.9 642 62.1
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 6.1e-126 455.7 635 55.4
Peaxi162Scf00420g00637 Petunia axillaris HOM05D007157 ORTHO05D009045 6.1e-126 455.7 638 56.1
CAN.G473.124 Capsicum annuum HOM05D007157 ORTHO05D009045 1.0e-125 454.9 637 57.5
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 3.0e-125 453.4 635 56.7
CiPaw.03G058300 Carya illinoinensis HOM05D007157 ORTHO05D009045 6.7e-125 452.2 633 61.8
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 6.7e-125 452.2 643 57.5
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 6.7e-125 452.2 635 55.7
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 2.5e-124 450.3 649 57.5
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 9.7e-124 448.4 629 61.2
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 2.8e-123 446.8 637 61.2
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 6.3e-123 445.7 642 61.5
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 1.8e-122 444.1 636 56.6
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 4.1e-122 443.0 634 59.0
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 2.2e-120 437.2 631 60.5
ClCG11G009400 Citrullus lanatus HOM05D007157 ORTHO05D009045 1.9e-119 434.1 631 57.7
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 2.7e-118 430.3 631 41.7
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 1.8e-117 427.6 629 58.5
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 2.3e-117 427.2 637 60.8
MSTRG.23478 Avicennia marina HOM05D007157 ORTHO05D009045 3.3e-116 423.3 642 57.8
Eucgr.H03351 Eucalyptus grandis HOM05D007157 ORTHO05D009045 4.8e-115 419.5 636 58.5
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 4.8e-115 419.5 636 59.4
Sc03g0006270 Simmondsia chinensis HOM05D007157 ORTHO05D009045 6.3e-115 419.1 636 57.5
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 1.5e-113 414.5 636 58.6
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 1.0e-112 411.8 631 56.1
Sabra16G0209300 Salix brachista HOM05D007157 ORTHO05D009045 3.8e-112 409.8 636 59.0
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 1.1e-111 408.3 405 50.9
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 1.1e-111 408.3 637 58.1
Cpa.g.c35912 Carica papaya HOM05D007157 ORTHO05D009045 3.2e-111 406.8 409 54.8
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 1.6e-110 404.4 638 54.5
Migut.H00838 Erythranthe guttata HOM05D007157 ORTHO05D009045 1.6e-110 404.4 616 59.4
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 7.9e-110 402.1 636 58.3
AUR62003414 Chenopodium quinoa HOM05D000173 ORTHO05D006747 2.0e-108 397.5 640 54.4
MELO3C008172.2 Cucumis melo HOM05D007157 ORTHO05D009045 4.4e-108 396.4 404 49.8
Potri.001G326800 Populus trichocarpa HOM05D007157 ORTHO05D009045 5.7e-108 396.0 636 55.3
Aqoxy5G03262 Aquilegia oxysepala HOM05D007157 ORTHO05D009045 1.3e-107 394.8 653 57.0
PSO017G3067 Papaver somniferum HOM05D007157 ORTHO05D009045 1.4e-106 391.3 410 51.7
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 1.5e-105 387.9 635 54.0
AUR62029427 Chenopodium quinoa HOM05D007157 ORTHO05D009045 7.7e-105 385.6 416 50.5
Lsat_1_v5_gn_0_3360 Lactuca sativa HOM05D007157 ORTHO05D009045 1.3e-104 384.8 643 55.8
QL02p070811 Quercus lobata HOM05D007157 ORTHO05D009045 2.2e-104 384.0 639 57.3
EL10Ac6g15443 Beta vulgaris HOM05D007157 ORTHO05D009045 2.9e-104 383.6 638 55.3
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 4.2e-103 379.8 635 53.4
HanXRQChr17g0551661 Helianthus annuus HOM05D007157 ORTHO05D009045 1.1e-100 371.7 397 52.9
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 5.7e-100 369.4 635 51.0
Aa31LG11G14870 Aethionema arabicum HOM05D007157 ORTHO05D009045 2.8e-99 367.1 664 51.1
Psat3g167400 Pisum sativum HOM05D007157 ORTHO05D009045 7.0e-98 362.5 455 70.1
Ca_12649_v3 Cicer arietinum L. HOM05D007157 ORTHO05D009045 9.1e-98 362.1 455 67.0
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 1.2e-97 361.7 635 50.9
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 2.9e-96 357.1 415 47.2
vmacro05975 Vaccinium macrocarpon HOM05D007157 ORTHO05D009045 6.5e-96 355.9 605 55.2
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 1.9e-95 354.4 415 47.0
Carub.0006s1227 Capsella rubella HOM05D007157 ORTHO05D009045 1.9e-95 354.4 634 53.3
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 1.9e-95 354.4 413 46.7
Lj5A791T21 Lonicera japonica HOM05D007157 ORTHO05D009045 4.7e-94 349.7 643 51.8
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 5.2e-93 346.3 636 53.0
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 2.0e-92 344.4 530 58.1
Ah.03g148180 Amaranthus hybridus HOM05D007157 ORTHO05D009045 3.4e-92 343.6 632 43.5
SHI04033 Sapria himalayana HOM05D007157 ORTHO05D009045 5.7e-92 342.8 631 35.3
SalBow3G1100 Salvia bowleyana HOM05D007157 ORTHO05D009045 4.5e-89 333.2 613 54.8
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 7.7e-89 332.4 634 52.1
THA.LOC104802372 Tarenaya hassleriana HOM05D007157 ORTHO05D009045 1.3e-88 331.6 407 46.2
SalBow3G1401 Salvia bowleyana HOM05D007157 ORTHO05D009045 8.5e-88 328.9 613 54.5
ATR0012G053 Amborella trichopoda HOM05D007157 ORTHO05D009045 1.9e-87 327.8 406 46.3
SGA_v2.0_scaffold211G42168 Striga asiatica HOM05D007157 ORTHO05D009045 2.9e-80 303.9 386 46.4
CDE01G0454 Ceratophyllum demersum HOM05D007157 ORTHO05D009045 4.7e-78 296.6 629 48.6
PGR083G0651 Punica granatum HOM05D007157 ORTHO05D009045 1.4e-74 285.0 417 41.5
Hma1.2p1_0812F.1_g222250 Hydrangea macrophylla HOM05D007157 ORTHO05D009045 2.0e-73 281.2 456 61.6
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 4.4e-68 263.5 322 47.8
FAN09G1907 Fragaria x ananassa HOM05D007157 ORTHO05D009045 5.4e-66 256.5 280 53.9
FAN09G1568 Fragaria x ananassa HOM05D007157 ORTHO05D009045 5.2e-61 240.0 349 67.6
Hund04273 Selenicereus undatus HOM05D007157 ORTHO05D009045 4.6e-57 226.9 605 43.1
Zm00001eb093300 Zea mays HOM05D007157 ORTHO05D009045 2.5e-55 221.1 336 41.4
BcaC02g07725 Brassica carinata HOM05D007157 ORTHO05D009045 2.6e-52 211.1 506 48.8
HPP92_009778 Vanilla planifolia HOM05D007157 ORTHO05D009045 2.6e-52 211.1 259 43.6
BolC4t27904H Brassica oleracea HOM05D007157 ORTHO05D009045 2.4e-42 177.9 286 38.5
TAR375G0551 Trochodendron aralioides HOM05D007157 ORTHO05D009045 4.2e-42 177.2 154 57.8
Cc00_g20250 Coffea canephora HOM05D007157 ORTHO05D009045 3.6e-38 164.1 363 60.1
Lj8P534T4 Lonicera japonica HOM05D007157 ORTHO05D009045 7.9e-33 146.4 133 54.9
TAR375G1084 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.4e-29 135.6 185 48.1
Actinidia05886 Actinidia chinensis HOM05D007157 ORTHO05D009045 1.6e-22 112.1 119 51.3
TPR.G29386 Trifolium pratense HOM05D007157 ORTHO05D009045 6.2e-22 110.2 96 56.2
TAR375G0854 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.3e-14 85.9 95 50.5
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 1.1e-13 82.8 407 25.6
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.8e-13 82.0 376 24.2
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 3.4e-12 77.8 404 25.2
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 5.9e-12 77.0 402 24.9
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 1.7e-11 75.5 385 25.2
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 3.8e-11 74.3 402 24.4
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 3.8e-11 74.3 402 24.4
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 6.5e-11 73.6 356 23.9
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 1.1e-10 72.8 352 25.3
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 1.4e-10 72.4 412 22.6
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 2.5e-10 71.6 356 23.6
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 3.2e-10 71.2 356 23.6
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 1.6e-09 68.9 409 24.4
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 1.0e-08 66.2 333 25.8
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 1.8e-08 65.5 242 25.6
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 2.3e-08 65.1 352 21.9
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 2.3e-08 65.1 296 25.0
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 3.0e-08 64.7 304 24.7
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 5.1e-08 63.9 372 22.3
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 6.7e-08 63.5 254 24.0
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.1e-07 62.8 189 28.0
AUR62014630 Chenopodium quinoa HOM05D000891 ORTHO05D000761 1.5e-07 62.4 162 27.8
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 1.5e-07 62.4 162 27.8
CDE07G1249 Ceratophyllum demersum HOM05D007128 ORTHO05D009059 1.9e-07 62.0 239 23.8
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.5e-07 61.6 254 25.2
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.5e-07 61.6 254 25.2
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 2.5e-07 61.6 248 23.8
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 4.3e-07 60.8 189 28.0
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 7.4e-07 60.1 331 24.5
Glyma.11G009000 Glycine max HOM05D007128 ORTHO05D009059 7.4e-07 60.1 240 25.0
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 7.4e-07 60.1 389 23.9
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 7.4e-07 60.1 350 23.1
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 7.4e-07 60.1 189 28.0
CDE05G1475 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 9.7e-07 59.7 195 26.7
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.3e-06 59.3 277 22.7
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 1.3e-06 59.3 251 25.5
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 1.3e-06 59.3 330 26.1
QL10p045743 Quercus lobata HOM05D007128 ORTHO05D009059 1.6e-06 58.9 246 23.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 1.6e-06 58.9 254 25.6
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 2.8e-06 58.2 291 24.4
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 2.8e-06 58.2 392 20.7
C01p15010 Brassica napus HOM05D000001 ORTHO05D000003 3.7e-06 57.8 257 24.5
AUR62012568 Chenopodium quinoa HOM05D000891 ORTHO05D000761 3.7e-06 57.8 124 30.6
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 3.7e-06 57.8 251 25.1
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 4.8e-06 57.4 254 24.8
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 4.8e-06 57.4 375 21.9
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 4.8e-06 57.4 272 24.6
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 6.3e-06 57.0 237 25.7
VMungo1309G2539 Vigna mungo HOM05D007128 ORTHO05D009059 6.3e-06 57.0 240 24.6
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 8.2e-06 56.6 234 26.9
BolC1t01449H Brassica oleracea HOM05D000001 ORTHO05D000003 8.2e-06 56.6 257 24.5
COL.COLO4_26085 Corchorus olitorius HOM05D000424 ORTHO05D000355 8.2e-06 56.6 243 24.3


User provided reference genes

Program Settings