Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.2e-39 166.0 80 100.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 8.4e-38 159.8 79 94.9
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 8.4e-38 159.8 79 94.9
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 8.4e-38 159.8 79 94.9
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 8.2e-33 143.3 79 82.3
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.4e-32 142.5 79 79.7
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 4.1e-32 141.0 79 79.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.2e-31 139.4 79 82.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 5.9e-31 137.1 79 78.5
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 2.2e-30 135.2 79 78.5
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 8.5e-30 133.3 79 75.9
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.1e-29 132.9 79 73.4
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.1e-29 132.9 79 75.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.4e-29 132.5 79 72.2
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 2.5e-29 131.7 79 74.7
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.5e-29 131.7 79 74.7
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 2.5e-29 131.7 79 73.4
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 3.2e-29 131.3 79 75.9
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.2e-29 131.3 79 74.7
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 3.2e-29 131.3 79 74.7
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.2e-29 131.0 79 73.4
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.2e-29 131.0 72 81.9
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 5.5e-29 130.6 79 72.2
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 7.2e-29 130.2 73 80.8
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 7.2e-29 130.2 72 83.3
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.2e-29 130.2 72 81.9
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 9.4e-29 129.8 79 74.7
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 9.4e-29 129.8 79 75.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 9.4e-29 129.8 79 73.4
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.1e-28 128.6 76 72.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.1e-28 128.6 76 72.4
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 2.7e-28 128.3 75 73.3
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 4.6e-28 127.5 79 74.7
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 6.1e-28 127.1 79 73.4
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 6.1e-28 127.1 76 71.1
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 6.1e-28 127.1 79 72.2
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 6.1e-28 127.1 79 70.9
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 6.1e-28 127.1 73 76.7
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 6.1e-28 127.1 75 77.3
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 6.1e-28 127.1 79 69.6
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 6.1e-28 127.1 79 69.6
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 7.9e-28 126.7 72 77.8
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.0e-27 126.3 76 73.7
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.0e-27 126.3 71 80.3
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.8e-27 125.6 79 68.4
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 2.3e-27 125.2 72 76.4
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.3e-27 125.2 73 75.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.0e-27 124.8 73 74.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.0e-27 124.8 79 72.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 3.0e-27 124.8 73 72.6
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.0e-27 124.8 73 74.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 3.0e-27 124.8 72 76.4
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 6.7e-27 123.6 72 75.0
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.7e-27 123.6 72 75.0
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.7e-27 123.6 72 75.0
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.7e-27 123.6 72 76.4
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 6.7e-27 123.6 73 71.2
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.1e-26 122.9 73 72.6
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.1e-26 122.9 73 72.6
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.1e-26 122.9 73 74.0
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.5e-26 122.5 72 73.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 2.0e-26 122.1 72 79.2
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.0e-26 122.1 72 69.4
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.5e-26 121.7 72 73.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.5e-26 121.7 75 69.3
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.5e-26 121.7 72 75.0
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.5e-26 121.7 72 75.0
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 3.3e-26 121.3 80 68.8
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 3.3e-26 121.3 72 73.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 3.3e-26 121.3 72 72.2
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 3.3e-26 121.3 72 75.0
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 4.3e-26 120.9 78 69.2
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.3e-26 120.9 72 73.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.3e-26 120.9 72 73.6
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 4.3e-26 120.9 75 72.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.3e-26 120.9 73 72.6
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.7e-26 120.6 72 72.2
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.7e-26 120.6 72 73.6
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 9.7e-26 119.8 76 71.1
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.3e-25 119.4 73 71.2
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.7e-25 119.0 72 72.2
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.7e-25 119.0 77 66.2
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.2e-25 118.6 78 69.2
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 2.8e-25 118.2 72 73.6
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.8e-25 118.2 72 73.6
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.8e-25 118.2 72 72.2
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.7e-25 117.9 72 70.8
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 3.7e-25 117.9 73 68.5
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 3.7e-25 117.9 72 70.8
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 3.7e-25 117.9 72 70.8
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.7e-25 117.9 72 72.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 4.8e-25 117.5 72 70.8
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 4.8e-25 117.5 72 72.2
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.3e-25 117.1 72 70.8
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.1e-24 116.3 72 69.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.4e-24 115.9 73 71.2
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.4e-24 115.9 79 67.1
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.8e-24 115.5 75 66.7
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.8e-24 115.5 79 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.4e-24 115.2 72 68.1
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.4e-24 115.2 73 69.9
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.4e-24 115.2 73 69.9
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 2.4e-24 115.2 78 69.2
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.1e-24 114.8 73 69.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 3.1e-24 114.8 73 69.9
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.1e-24 114.8 73 69.9
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 3.1e-24 114.8 79 64.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 4.1e-24 114.4 73 68.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.1e-24 114.4 73 69.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.3e-24 114.0 63 82.5
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 5.3e-24 114.0 73 69.9
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 5.3e-24 114.0 78 62.8
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 5.3e-24 114.0 73 68.5
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 5.3e-24 114.0 79 64.6
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 5.3e-24 114.0 73 68.5
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 9.1e-24 113.2 79 63.3
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.2e-23 112.8 73 68.5
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.0e-23 112.1 73 68.5
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 4.5e-23 110.9 73 67.1
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 4.5e-23 110.9 79 64.6
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 5.9e-23 110.5 73 67.1
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 5.9e-23 110.5 112 51.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 7.7e-23 110.2 73 68.5
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 7.7e-23 110.2 73 68.5
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 3.8e-22 107.8 73 67.1
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 6.5e-22 107.1 83 61.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 8.5e-22 106.7 73 65.8
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.4e-21 105.9 72 66.7
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-21 105.9 68 70.6
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.9e-21 105.5 75 64.0
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 7.2e-21 103.6 61 73.8
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 9.4e-21 103.2 61 68.9
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-20 102.1 73 64.4
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 2.1e-20 102.1 72 61.1
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.4e-19 99.4 73 60.3
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 2.3e-19 98.6 74 59.5
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.1e-18 96.3 72 59.7
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.1e-18 96.3 65 69.2
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.5e-18 95.9 79 65.8
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 9.7e-18 93.2 73 53.4
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.3e-17 92.8 73 57.5
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.4e-16 89.4 63 63.5
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.8e-16 89.0 67 58.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 9.1e-16 86.7 59 62.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.0e-15 85.5 60 63.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.9e-15 84.0 74 58.1
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 7.7e-15 83.6 67 55.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.1e-13 79.7 68 57.4
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 3.1e-08 61.6 57 49.1
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 9.1e-08 60.1 75 49.3
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 2.0e-07 58.9 68 38.2


User provided reference genes

Program Settings