Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 2.8e-260 901.4 441 100.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 9.1e-259 896.3 441 99.1
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.5e-229 799.3 428 88.6
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 4.3e-224 781.2 430 87.2
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.1e-223 778.9 430 86.5
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.3e-222 775.4 432 86.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 4.0e-222 774.6 441 82.5
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 6.8e-222 773.9 428 86.0
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 3.2e-219 765.0 425 85.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.6e-218 762.7 441 81.9
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.8e-214 749.2 441 80.3
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.2e-213 746.5 441 79.8
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.3e-212 743.0 412 85.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.7e-212 742.7 434 80.2
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.2e-212 742.3 441 80.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.2e-212 742.3 430 82.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.2e-212 742.3 441 80.5
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.4e-212 740.7 441 79.6
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 8.3e-212 740.3 440 80.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 5.4e-211 737.6 441 79.1
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 7.1e-211 737.3 438 79.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.0e-209 733.4 439 78.8
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.3e-209 733.0 441 78.7
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 8.6e-209 730.3 441 78.7
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.1e-208 729.9 428 80.4
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.9e-208 729.2 441 78.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 2.5e-208 728.8 441 78.5
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 3.3e-208 728.4 439 79.3
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 5.6e-208 727.6 440 77.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 7.3e-208 727.2 440 77.5
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.3e-208 727.2 441 78.5
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 2.8e-207 725.3 435 77.7
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 8.1e-207 723.8 439 76.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.1e-206 723.4 441 77.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.8e-206 722.6 439 77.2
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.8e-206 722.6 441 77.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 3.1e-206 721.8 438 77.6
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 4.0e-206 721.5 437 77.8
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.5e-205 719.5 430 80.5
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 7.6e-205 717.2 437 76.2
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 7.6e-205 717.2 438 78.1
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 9.9e-205 716.8 438 76.3
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 8.4e-204 713.8 441 76.4
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.4e-203 713.0 441 78.2
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 2.4e-203 712.2 439 75.4
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 9.2e-203 710.3 441 76.2
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.7e-202 708.8 441 76.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.0e-201 706.8 439 76.3
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.0e-201 706.8 456 73.9
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.3e-201 706.4 439 75.2
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-201 706.4 448 74.1
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.7e-201 706.1 440 74.8
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.3e-201 705.7 430 77.0
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 3.9e-201 704.9 439 75.4
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 5.1e-201 704.5 436 76.1
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 5.1e-201 704.5 439 74.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-200 703.4 437 74.8
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.5e-200 703.0 437 74.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 4.3e-200 701.4 414 80.7
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 5.6e-200 701.0 416 79.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 6.2e-199 697.6 441 74.4
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.4e-198 696.4 440 74.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.8e-198 696.0 439 74.0
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 4.0e-198 694.9 447 74.0
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.2e-197 693.3 427 77.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.5e-197 693.0 438 74.4
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.5e-197 693.0 420 77.9
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 2.0e-197 692.6 438 74.2
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 3.4e-197 691.8 438 74.2
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 7.6e-197 690.6 439 74.3
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 3.8e-196 688.3 439 73.1
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 6.4e-196 687.6 436 73.2
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 8.4e-196 687.2 438 73.7
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.1e-194 682.6 439 73.6
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.5e-194 681.8 436 72.7
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.0e-193 680.2 396 79.8
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.3e-193 679.1 438 73.5
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.3e-193 679.1 420 76.9
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-192 676.8 464 70.0
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.5e-192 675.6 422 74.9
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 4.3e-192 674.9 428 75.7
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 5.6e-192 674.5 419 74.5
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 7.3e-192 674.1 442 72.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-191 673.3 448 71.9
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.8e-189 664.5 455 71.4
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.3e-185 653.3 430 71.9
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.1e-184 650.2 421 73.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.3e-184 648.7 430 70.9
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 4.8e-183 644.8 473 67.4
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.7e-180 636.3 497 66.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 1.8e-177 626.3 409 72.9
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.7e-175 618.6 438 65.3
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 6.9e-174 614.4 448 67.4
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.0e-173 612.8 438 65.5
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 3.7e-167 592.0 392 71.2
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 1.8e-166 589.7 470 64.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.3e-166 588.2 483 59.4
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 6.9e-166 587.8 421 68.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 3.4e-165 585.5 365 76.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.5e-165 585.1 540 56.9
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 5.7e-160 568.2 375 68.5
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 5.7e-160 568.2 369 74.8
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.6e-152 542.7 441 61.7
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 3.3e-152 542.3 438 56.4
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.3e-150 535.0 436 57.3
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.5e-149 531.9 464 58.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.2e-148 529.6 439 60.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.2e-147 525.8 425 58.4
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.0e-145 519.2 464 54.5
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.6e-141 506.9 435 55.9
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.6e-138 496.9 422 59.0
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.1e-134 482.6 443 52.6
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 5.4e-126 455.3 432 51.4
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.5e-123 444.5 270 76.3
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.8e-113 411.8 246 76.0
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.4e-104 382.9 244 76.6
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.5e-99 367.5 453 43.5
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 3.3e-99 366.3 196 83.7
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 2.1e-98 363.6 509 39.1
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.4e-96 356.3 196 81.6
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 4.4e-96 355.9 368 44.6
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 5.4e-94 349.0 269 63.6
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 6.8e-89 332.0 244 66.8
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.2e-66 255.8 157 77.7
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.6e-61 241.1 197 62.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.4e-56 223.4 169 62.7
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 4.1e-49 199.9 184 55.4
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.5e-48 198.0 423 31.9
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 2.5e-46 190.7 246 43.1
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.3e-44 184.1 143 60.8
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.5e-43 180.6 183 51.4
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 8.2e-42 175.6 193 49.2
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 8.2e-42 175.6 113 66.4
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.1e-41 173.3 95 77.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.2e-38 163.7 132 56.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.4e-33 148.3 96 68.8
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 7.0e-33 146.0 143 51.7
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.2e-32 145.2 86 72.1
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 6.5e-31 139.4 125 55.2
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 3.2e-30 137.1 129 57.4
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 4.8e-26 123.2 126 51.6
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.4e-22 109.0 93 55.9
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.2e-21 108.6 124 46.0
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 1.7e-18 98.2 66 66.7
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 7.0e-17 92.8 63 71.4
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 8.0e-13 79.3 71 54.9
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 3.0e-12 77.4 65 61.5
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.9e-10 70.1 43 72.1
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 4.1e-09 67.0 82 45.1
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 4.5e-08 63.5 72 45.8
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 4.5e-08 63.5 72 45.8
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 7.7e-08 62.8 51 56.9
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.0e-07 62.4 70 45.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.5e-06 57.8 40 65.0


User provided reference genes

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