Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 1.9e-111 406.0 222 100.0
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.4e-42 175.3 114 86.8
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.4e-42 175.3 114 86.8
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 4.6e-41 172.2 114 86.0
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 7.8e-41 171.4 114 85.1
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 2.5e-39 166.4 93 92.5
arahy.Tifrunner.gnm1.ann1.3P39BB Arachis hypogaea HOM05D059808 ORTHO05D087682 1.4e-37 160.6 92 96.7
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-37 159.8 92 92.4
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.6e-30 136.0 92 75.0
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 5.2e-29 132.1 98 77.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 8.9e-29 131.3 89 80.9
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 8.9e-29 131.3 119 64.7
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.5e-28 130.6 136 59.6
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 2.0e-28 130.2 92 76.1
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 3.4e-28 129.4 89 79.8
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 5.8e-28 128.6 79 84.8
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 7.6e-28 128.3 125 60.8
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 4.1e-26 122.5 72 94.4
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 3.5e-25 119.4 94 67.0
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 1.6e-22 110.5 132 53.0
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.1e-22 110.2 130 53.8
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 3.6e-22 109.4 124 54.0
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 6.2e-22 108.6 111 58.6
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 6.2e-22 108.6 129 51.9
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.8e-21 107.1 82 69.5
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 4.0e-21 105.9 133 51.1
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 5.2e-21 105.5 127 52.0
arahy.Tifrunner.gnm1.ann1.PQG7YC Arachis hypogaea HOM05D059808 ORTHO05D083734 1.5e-20 104.0 92 70.7
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 1.5e-20 104.0 131 48.9
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.5e-20 104.0 91 64.8
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 2.0e-20 103.6 135 50.4
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 2.6e-20 103.2 120 55.0
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 3.4e-20 102.8 125 54.4
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.4e-20 102.4 86 66.3
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 4.4e-20 102.4 95 61.1
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 4.4e-20 102.4 120 51.7
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.8e-20 102.1 86 66.3
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.8e-20 102.1 86 66.3
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 9.9e-20 101.3 135 49.6
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.3e-19 100.9 147 48.3
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.3e-19 100.9 120 54.2
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.7e-19 100.5 117 55.6
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.7e-19 100.5 117 55.6
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 1.7e-19 100.5 81 65.4
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 3.8e-19 99.4 86 64.0
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 3.8e-19 99.4 82 68.3
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 4.9e-19 99.0 150 46.0
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.4e-19 98.6 139 47.5
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.4e-19 98.6 141 47.5
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.4e-19 98.6 139 47.5
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 6.4e-19 98.6 117 53.8
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 6.4e-19 98.6 141 46.8
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 1.9e-18 97.1 117 53.8
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 3.2e-18 96.3 82 63.4
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 3.2e-18 96.3 100 60.0
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 4.2e-18 95.9 121 51.2
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 4.2e-18 95.9 159 44.7
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.2e-18 95.9 84 63.1
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 7.1e-18 95.1 135 45.2
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 7.1e-18 95.1 124 50.0
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 9.3e-18 94.7 84 63.1
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 1.6e-17 94.0 137 48.2
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.1e-17 93.6 103 52.4
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.7e-17 93.2 82 62.2
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.0e-16 91.3 118 50.0
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.7e-16 90.5 144 46.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 2.3e-16 90.1 72 63.9
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.3e-16 90.1 82 63.4
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 3.0e-16 89.7 133 50.4
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.6e-16 88.6 84 59.5
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 8.7e-16 88.2 101 52.5
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 1.1e-15 87.8 113 48.7
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 4.3e-15 85.9 82 62.2
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 4.3e-15 85.9 53 83.0
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 4.3e-15 85.9 100 53.0
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 5.6e-15 85.5 103 55.3
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 5.6e-15 85.5 101 51.5
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 7.3e-15 85.1 82 58.5
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 9.6e-15 84.7 56 78.6
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 9.6e-15 84.7 56 78.6
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 9.6e-15 84.7 56 78.6
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 9.6e-15 84.7 131 45.0
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 9.6e-15 84.7 52 82.7
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 1.6e-14 84.0 194 37.6
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.6e-14 84.0 92 52.2
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 2.1e-14 83.6 126 47.6
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 2.8e-14 83.2 123 46.3
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 2.8e-14 83.2 52 82.7
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 2.8e-14 83.2 79 59.5
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 2.8e-14 83.2 134 44.0
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 3.6e-14 82.8 60 73.3
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 4.8e-14 82.4 60 71.7
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 6.2e-14 82.0 87 59.8
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 8.1e-14 81.6 85 56.5
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 2.4e-13 80.1 53 79.2
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 2.4e-13 80.1 90 50.0
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 3.1e-13 79.7 60 71.7
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.1e-13 79.7 56 73.2
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 6.9e-13 78.6 100 49.0
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 1.2e-12 77.8 53 73.6
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 2.0e-12 77.0 129 41.9
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 2.0e-12 77.0 81 55.6
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 3.4e-12 76.3 108 44.4
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 7.6e-12 75.1 89 51.7
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.7e-11 73.9 53 71.7
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 3.8e-11 72.8 110 45.5
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 6.4e-11 72.0 71 60.6
arahy.Tifrunner.gnm1.ann1.AH6D3Q Arachis hypogaea HOM05D001266 ORTHO05D001105 1.1e-10 71.2 40 92.5
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 5.4e-10 68.9 144 38.2
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 5.4e-10 68.9 74 55.4
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 1.6e-09 67.4 107 43.0
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 2.1e-09 67.0 41 78.0
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 6.0e-09 65.5 78 50.0
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 2.3e-08 63.5 64 59.4
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.5e-07 60.8 37 78.4
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 3.3e-07 59.7 39 87.2
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 4.3e-07 59.3 99 42.4
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.1e-06 57.0 47 59.6
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.8e-06 56.6 83 37.3
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.1e-06 55.1 47 59.6


User provided reference genes

Program Settings