Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.5e-73 277.7 157 100.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.5e-73 277.7 157 100.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 5.5e-73 277.7 157 100.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 3.3e-62 241.9 143 88.8
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 9.0e-60 233.8 155 80.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.0e-58 230.3 140 87.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.9e-58 228.8 155 77.4
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 5.0e-58 228.0 155 81.9
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.4e-57 226.5 156 76.9
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.4e-57 226.5 155 78.1
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.9e-57 226.1 140 85.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.2e-57 225.3 155 75.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 3.2e-57 225.3 140 85.7
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 7.2e-57 224.2 155 77.4
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 7.2e-57 224.2 140 82.1
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 9.3e-57 223.8 140 82.1
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.2e-56 223.4 153 74.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.2e-56 223.4 153 77.8
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.2e-56 223.4 137 83.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.6e-56 223.0 140 80.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.1e-56 222.6 155 75.5
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.1e-56 222.6 139 82.0
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.1e-56 222.6 155 78.7
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.7e-56 222.2 139 82.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 3.6e-56 221.9 155 78.1
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 4.6e-56 221.5 139 81.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 4.6e-56 221.5 157 74.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 4.6e-56 221.5 139 81.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 4.6e-56 221.5 139 81.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.0e-55 220.3 155 74.2
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.0e-55 220.3 139 80.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.0e-55 220.3 156 74.4
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.3e-55 219.9 140 82.9
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.3e-55 219.9 140 80.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.8e-55 219.5 157 73.2
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.9e-55 218.4 161 72.7
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.1e-55 218.0 158 72.8
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 6.7e-55 217.6 140 77.9
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.7e-55 217.6 137 81.8
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 8.7e-55 217.2 160 70.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.7e-55 217.2 142 77.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-54 216.9 157 73.2
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.1e-54 216.9 140 80.0
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.5e-54 215.7 143 79.0
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.3e-54 215.3 158 70.3
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 4.3e-54 214.9 139 78.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.3e-54 214.9 139 77.7
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 4.3e-54 214.9 153 74.5
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 4.3e-54 214.9 143 77.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 4.3e-54 214.9 139 79.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.7e-54 214.5 140 78.6
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.4e-54 214.2 155 71.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.4e-54 214.2 155 71.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.4e-54 214.2 140 77.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 9.7e-54 213.8 145 76.6
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.3e-53 213.4 141 78.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.3e-53 213.4 139 79.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-53 213.4 142 76.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.6e-53 213.0 142 76.8
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.2e-53 212.6 143 76.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.2e-53 212.6 141 75.2
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.2e-53 212.6 145 75.9
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.2e-53 212.6 140 77.9
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.7e-53 211.8 140 77.9
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.7e-53 211.8 140 77.1
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.2e-53 210.7 143 76.2
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 8.2e-53 210.7 140 75.7
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 8.2e-53 210.7 137 78.1
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.4e-52 209.1 139 79.1
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.4e-52 209.1 137 78.1
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 3.1e-52 208.8 140 76.4
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-52 208.4 142 75.4
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.1e-52 207.2 142 74.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.2e-51 206.8 185 64.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-51 206.8 142 73.9
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.5e-51 206.5 142 74.6
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-51 205.7 142 73.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.4e-51 205.3 143 74.8
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 3.4e-51 205.3 143 74.1
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 3.4e-51 205.3 143 74.1
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 4.5e-51 204.9 135 76.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 4.5e-51 204.9 143 74.1
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 4.5e-51 204.9 143 74.1
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 4.5e-51 204.9 143 74.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 4.5e-51 204.9 142 73.2
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.9e-51 204.5 143 74.1
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.9e-51 204.5 143 74.1
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.0e-50 203.8 136 74.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.3e-50 203.4 143 73.4
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-50 203.4 142 71.8
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-50 203.4 142 71.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-50 203.4 142 71.8
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.7e-50 203.0 147 71.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-50 202.6 140 75.0
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.8e-50 201.8 140 72.9
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 5.0e-50 201.4 193 59.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.0e-50 201.4 142 71.8
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-49 200.3 140 72.1
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 6.1e-48 194.5 153 68.0
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.0e-47 193.7 120 82.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.0e-47 193.7 117 83.8
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.4e-47 193.4 114 86.0
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 3.9e-47 191.8 113 85.8
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 5.1e-47 191.4 129 77.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 6.7e-47 191.0 117 82.9
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.1e-46 190.3 223 53.4
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.5e-46 189.9 129 76.0
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.5e-46 189.9 129 76.0
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.5e-46 189.9 179 58.7
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.3e-46 188.7 150 66.7
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 3.3e-46 188.7 189 56.1
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 9.7e-46 187.2 114 80.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.3e-45 186.8 228 50.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-45 185.7 142 67.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-45 184.9 142 66.9
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-44 183.7 142 66.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.4e-44 183.3 140 70.7
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.4e-44 183.3 147 67.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 6.9e-44 181.0 114 80.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 6.9e-44 181.0 114 80.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-43 180.3 114 80.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 80.7
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.4e-43 178.7 114 79.8
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-42 176.4 114 78.9
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-42 176.0 114 78.9
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.9e-42 175.6 114 78.1
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 3.8e-42 175.3 114 78.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.1e-41 173.7 244 46.7
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.9e-41 172.9 138 62.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.2e-40 170.2 138 61.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-40 169.5 109 75.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-40 169.5 109 75.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.6e-40 168.7 113 75.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.7e-40 168.3 139 56.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.0e-39 167.2 138 63.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.7e-37 158.7 152 58.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.8e-36 156.4 134 56.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 3.0e-31 139.0 87 82.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 8.8e-31 137.5 87 79.3
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 8.8e-31 137.5 90 83.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.7e-30 134.0 93 72.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.8e-29 131.7 200 42.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.7e-26 123.2 148 44.6
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.2e-26 122.9 84 66.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 4.7e-24 115.2 134 50.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.0e-23 114.0 138 40.6
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-22 109.8 70 81.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-22 109.8 70 81.4
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.6e-22 109.4 70 78.6
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-21 107.1 70 78.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.8e-21 105.9 80 66.2
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 5.9e-19 98.2 64 78.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-18 97.4 59 78.0
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-18 97.1 59 78.0
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.9e-18 95.9 64 78.1
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.1e-16 89.7 59 72.9
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.0e-15 85.9 127 36.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.6e-14 82.8 135 33.3
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-12 77.4 60 68.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.4e-12 77.0 48 75.0
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.0e-12 74.7 60 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 7.0e-12 74.7 72 58.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.5e-11 72.0 52 63.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.0e-10 68.6 48 70.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.0e-10 68.6 48 70.8
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 8.9e-07 57.8 47 68.1


User provided reference genes

Program Settings