Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VIS9FS Arachis hypogaea HOM05D003313 ORTHO05D004217 3.2e-157 558.5 313 100.0
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.6e-68 263.8 192 82.8
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 2.8e-68 263.1 192 82.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.2e-63 247.7 192 76.0
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 1.6e-63 247.3 192 76.0
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 3.5e-63 246.1 192 76.6
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 6.0e-63 245.4 192 75.5
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 7.8e-63 245.0 192 75.5
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 1.5e-61 240.7 192 73.4
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.6e-60 236.1 192 74.0
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.8e-59 233.8 192 72.4
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 2.4e-59 233.4 192 74.0
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.2e-56 223.0 191 69.6
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.2e-56 223.0 191 69.6
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.2e-56 223.0 191 69.6
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 1.6e-55 220.7 194 71.1
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.6e-55 220.7 194 70.6
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 3.5e-55 219.5 194 70.6
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.6e-55 219.2 194 70.1
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.6e-55 219.2 194 70.1
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 2.3e-54 216.9 192 69.8
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 5.1e-54 215.7 194 70.1
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 5.1e-54 215.7 192 68.2
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 1.5e-53 214.2 194 69.6
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.5e-53 213.4 195 68.2
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.3e-53 213.0 194 67.5
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.3e-53 213.0 194 68.0
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.6e-53 212.2 195 67.7
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 5.6e-53 212.2 208 65.4
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 9.6e-53 211.5 194 67.5
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.2e-52 211.1 194 68.6
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 2.1e-52 210.3 194 67.0
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 2.8e-52 209.9 191 67.0
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 3.6e-52 209.5 193 66.8
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 3.6e-52 209.5 151 69.5
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 3.6e-52 209.5 194 66.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 6.2e-52 208.8 193 65.3
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 1.1e-51 208.0 194 69.6
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 2.4e-51 206.8 194 67.5
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 9.0e-51 204.9 194 64.4
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 9.0e-51 204.9 194 64.9
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 9.0e-51 204.9 194 64.9
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.5e-50 204.1 194 66.0
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.5e-50 204.1 195 67.2
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 2.0e-50 203.8 194 65.5
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.4e-50 203.0 192 65.6
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 4.4e-50 202.6 194 65.5
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.4e-50 202.6 194 65.5
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 4.4e-50 202.6 194 64.4
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 5.8e-50 202.2 193 67.4
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 7.6e-50 201.8 194 64.4
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 2.9e-49 199.9 194 62.9
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 4.9e-49 199.1 194 63.9
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 4.9e-49 199.1 194 64.4
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 4.9e-49 199.1 194 64.9
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 6.4e-49 198.7 194 63.4
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 8.4e-49 198.4 194 66.0
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.2e-48 196.4 195 62.6
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 9.3e-48 194.9 198 64.1
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 9.3e-48 194.9 198 64.1
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.6e-47 194.1 194 62.9
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 2.1e-47 193.7 198 63.6
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 2.1e-47 193.7 198 63.6
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 2.7e-47 193.4 194 64.4
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 3.5e-47 193.0 108 89.8
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.5e-47 193.0 194 62.4
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 4.6e-47 192.6 198 64.6
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 4.6e-47 192.6 193 61.7
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 4.6e-47 192.6 193 61.1
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 7.8e-47 191.8 193 62.2
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.0e-46 191.4 198 63.6
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.0e-46 191.4 198 63.6
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 1.0e-46 191.4 194 63.9
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.0e-46 191.4 194 63.9
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.0e-46 191.4 194 63.9
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.0e-46 191.4 194 63.9
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.3e-46 191.0 194 65.5
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 1.7e-46 190.7 189 57.7
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.7e-46 190.7 194 61.3
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.7e-46 190.7 194 65.5
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 2.3e-46 190.3 198 65.2
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 5.1e-46 189.1 193 63.2
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.1e-46 189.1 194 63.4
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 6.6e-46 188.7 195 61.5
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.5e-45 186.8 192 65.1
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 2.5e-45 186.8 198 61.6
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 7.3e-45 185.3 198 63.6
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 9.6e-45 184.9 194 60.3
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 9.6e-45 184.9 194 60.3
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.6e-44 184.1 194 60.8
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 2.1e-44 183.7 194 58.8
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 3.6e-44 183.0 194 60.8
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 8.1e-44 181.8 193 61.1
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 8.1e-44 181.8 193 61.1
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.1e-43 181.4 194 59.8
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.8e-43 180.6 193 60.6
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.1e-43 179.9 194 62.4
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 6.9e-43 178.7 177 65.5
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 1.2e-42 177.9 175 56.0
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.2e-42 177.9 194 58.8
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 9.9e-42 174.9 198 61.6
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 2.9e-41 173.3 199 61.3
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 2.9e-41 173.3 199 61.3
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 3.8e-41 172.9 198 61.6
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.8e-41 172.9 198 62.1
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 8.4e-41 171.8 198 61.6
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 7.1e-40 168.7 190 52.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.2e-39 167.9 190 52.1
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.1e-37 161.4 179 63.1
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 1.3e-36 157.9 195 53.3
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 2.1e-36 157.1 108 68.5
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.1e-36 155.2 108 68.5
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.1e-36 155.2 106 68.9
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.4e-35 154.5 106 68.9
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 2.4e-35 153.7 114 71.9
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 4.0e-35 152.9 108 69.4
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 9.0e-35 151.8 106 71.7
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 1.1e-32 144.8 145 57.9
Psat5g204560 Pisum sativum HOM05D000518 ORTHO05D000737 6.0e-31 139.0 145 55.9
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 1.0e-30 138.3 82 85.4
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 1.5e-29 134.4 108 65.7
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 1.9e-29 134.0 84 81.0
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 1.4e-27 127.9 128 58.6
arahy.Tifrunner.gnm1.ann1.UGM12E Arachis hypogaea HOM05D003313 ORTHO05D004217 7.6e-26 122.1 128 69.5
Hma1.2p1_0105F.1_g050850 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 1.0e-25 121.7 118 59.3
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 4.9e-25 119.4 191 48.2
arahy.Tifrunner.gnm1.ann1.ZR84UM Arachis hypogaea HOM05D003313 ORTHO05D012270 5.5e-24 115.9 70 85.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.0e-22 111.7 67 80.6
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 3.9e-22 109.8 69 78.3
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 6.7e-22 109.0 193 47.7
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 8.7e-22 108.6 67 76.1
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 1.9e-21 107.5 223 43.5
SHI06530 Sapria himalayana HOM05D003313 ORTHO05D004217 8.2e-20 102.1 99 58.6
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.1e-19 100.1 194 41.8
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 5.3e-19 99.4 108 65.7
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 7.7e-18 95.5 195 42.1
Psat5g199800 Pisum sativum HOM05D003313 ORTHO05D004031 1.9e-16 90.9 110 50.9
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 6.1e-15 85.9 201 38.3
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 8.8e-14 82.0 108 57.4
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 1.5e-13 81.3 108 50.9
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.7e-12 77.8 156 34.6


User provided reference genes

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