Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1154.8 603 100.0
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1137.9 603 99.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1118.2 603 97.5
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 0.0e+00 1115.5 603 97.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.7e-295 1017.7 601 88.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 9.1e-294 1013.1 602 87.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.6e-293 1012.3 601 88.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.8e-292 1007.7 601 87.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.5e-291 1005.7 605 86.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.1e-290 1000.3 601 86.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 8.8e-289 996.5 605 86.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 4.8e-287 990.7 605 86.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.6e-285 985.7 606 85.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 4.5e-277 957.6 603 83.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.3e-271 939.5 603 82.8
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.1e-270 936.4 589 82.2
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.0e-268 928.3 595 80.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.0e-268 928.3 589 82.9
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 8.6e-268 926.8 604 79.5
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.1e-267 926.4 589 81.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-266 922.9 589 82.0
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.2e-266 922.9 601 81.4
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.8e-266 921.8 594 80.3
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 4.7e-266 921.0 589 81.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.8e-265 919.1 598 80.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.3e-265 918.7 589 81.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 5.2e-265 917.5 589 80.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.0e-264 915.6 589 81.5
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.4e-264 914.4 589 80.6
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 4.4e-264 914.4 601 80.9
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.5e-264 913.7 589 81.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.7e-263 912.5 600 79.8
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 6.4e-263 910.6 590 79.8
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 8.3e-263 910.2 590 80.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.4e-262 908.7 589 80.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.1e-262 907.9 589 80.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.2e-262 906.7 593 79.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.5e-261 904.8 589 79.8
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 6.0e-261 904.0 601 78.5
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.7e-260 902.5 589 80.8
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.3e-260 902.1 597 78.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 7.3e-259 897.1 589 79.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.3e-259 897.1 581 79.3
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.2e-258 896.3 581 79.3
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.8e-257 890.6 594 78.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 7.5e-256 887.1 590 78.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 9.9e-256 886.7 565 80.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.9e-256 886.7 597 77.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.3e-255 886.3 597 77.6
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.2e-255 885.6 597 77.2
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.2e-255 885.6 591 78.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.1e-254 883.2 590 78.8
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.9e-254 882.5 589 77.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-252 876.7 589 77.1
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 8.6e-252 873.6 592 75.5
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.5e-251 872.8 595 75.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.9e-251 872.5 699 68.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.6e-251 870.9 590 75.3
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 7.3e-251 870.5 590 75.4
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 7.3e-251 870.5 590 75.9
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 7.3e-251 870.5 602 74.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.2e-250 869.8 592 75.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.1e-250 869.0 590 75.6
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 8.1e-250 867.1 597 75.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-249 865.9 602 73.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-248 863.2 602 73.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-248 862.1 600 73.7
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 4.4e-248 861.3 603 74.1
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 9.9e-248 860.1 595 74.5
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.2e-247 859.0 589 76.2
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 3.8e-247 858.2 592 74.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.9e-247 857.8 637 72.2
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.4e-246 854.4 598 73.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.1e-245 852.4 601 74.0
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 7.8e-245 850.5 594 74.7
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.3e-244 849.0 591 74.5
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.0e-244 848.6 591 74.3
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 5.1e-244 847.8 589 75.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 6.6e-244 847.4 580 75.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.6e-244 847.4 694 66.4
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.9e-243 845.9 564 76.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.6e-242 842.8 590 73.7
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.1e-241 838.6 585 74.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 5.3e-241 837.8 591 75.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.9e-241 837.4 584 75.0
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.2e-240 836.6 508 83.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 3.4e-240 835.1 599 73.6
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.4e-240 834.7 590 72.7
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.4e-240 834.7 563 76.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 5.8e-240 834.3 578 74.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.8e-240 834.3 580 74.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 9.9e-240 833.6 591 72.9
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 9.9e-240 833.6 601 74.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.7e-239 832.8 593 74.7
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.7e-239 832.8 595 74.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.7e-239 832.8 600 74.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 5.4e-238 827.8 601 73.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.6e-237 826.2 597 73.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.3e-236 822.4 612 71.4
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.1e-235 820.1 599 71.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 5.6e-235 817.8 570 74.6
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.3e-235 817.4 589 74.0
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 9.6e-235 817.0 591 71.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.1e-234 815.8 597 71.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.2e-234 814.3 592 72.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.0e-228 797.0 604 71.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.3e-228 796.6 598 71.9
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.8e-228 796.2 511 79.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.3e-227 791.6 598 71.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.1e-225 785.4 599 70.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-224 783.5 598 70.9
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 6.4e-223 777.7 592 69.9
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 5.6e-219 764.6 564 71.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.0e-217 757.3 581 68.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.2e-215 752.7 592 66.2
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.9e-215 751.5 592 68.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.7e-207 726.5 594 65.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 9.4e-206 720.7 602 66.1
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.7e-202 708.8 588 65.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.9e-197 691.0 602 63.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.7e-187 658.3 501 69.9
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.2e-181 640.6 448 73.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.6e-181 639.0 433 77.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.0e-173 611.3 477 65.8
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.3e-172 609.8 507 67.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 9.5e-166 587.8 526 61.2
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.0e-164 582.4 376 80.9
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.6e-158 562.0 372 75.8
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.3e-154 548.1 589 56.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 8.3e-146 521.5 518 52.9
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-132 476.9 400 65.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.7e-127 460.7 330 74.5
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.5e-115 421.0 309 71.8
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.9e-114 416.8 252 85.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.2e-112 411.4 521 47.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.1e-96 357.5 568 40.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.7e-96 357.1 226 78.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.5e-89 332.8 229 75.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.9e-80 302.4 220 70.5
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-76 292.0 210 68.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.1e-65 255.4 258 52.7
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 9.1e-60 235.7 324 42.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.1e-52 212.2 132 81.1
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.7e-48 196.8 266 45.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 5.2e-39 166.8 131 64.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.2e-31 140.2 137 58.4
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 5.1e-26 123.6 103 66.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.1e-23 115.9 101 64.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 9.9e-22 109.4 187 41.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.9e-21 107.8 204 39.7
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 88.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.9e-17 95.1 50 84.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.5e-17 94.7 81 61.7
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.9e-14 82.8 52 80.8
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.1e-11 75.1 60 61.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.0e-10 72.8 74 51.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.3e-10 72.4 74 51.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 8.7e-10 69.7 74 50.0
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 4.8e-08 63.9 57 52.6
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 6.2e-08 63.5 57 56.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 6.9e-07 60.1 244 28.7
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 2.6e-06 58.2 51 64.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 9.9e-06 56.2 51 43.1


User provided reference genes

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