Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 4.0e-108 394.8 206 100.0
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.1e-100 368.6 206 94.7
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 1.5e-91 339.7 208 83.7
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.6e-91 339.0 208 83.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 4.9e-90 334.7 207 83.6
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.9e-89 332.8 207 82.6
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 3.3e-86 322.0 206 79.6
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.3e-85 320.1 206 81.6
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.5e-83 313.2 207 82.6
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 2.1e-80 302.8 206 77.7
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.9e-78 296.2 209 77.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.5e-78 295.8 208 75.5
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 7.4e-78 294.3 206 79.1
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 4.8e-77 291.6 210 73.8
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.1e-76 290.4 210 73.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.8e-76 289.7 206 75.7
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.4e-75 285.4 205 75.1
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 4.5e-75 285.0 208 73.1
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 4.5e-75 285.0 205 73.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.9e-75 284.6 205 72.7
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 3.8e-74 282.0 208 76.9
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 6.5e-74 281.2 190 79.5
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.1e-73 280.4 208 68.8
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.1e-73 280.4 206 71.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.4e-73 280.0 206 71.8
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.4e-73 280.0 190 73.7
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.2e-73 277.7 206 71.4
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 9.3e-73 277.3 209 71.3
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-72 276.9 211 70.6
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.2e-72 276.9 218 67.9
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.2e-72 276.9 205 71.2
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 2.1e-72 276.2 205 72.7
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 3.6e-72 275.4 195 75.4
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.6e-72 275.0 209 73.2
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.3e-71 273.5 206 71.4
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 3.0e-71 272.3 206 74.8
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.0e-71 272.3 205 70.7
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.0e-71 272.3 214 68.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 3.9e-71 271.9 205 73.2
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 3.9e-71 271.9 205 71.2
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 5.1e-71 271.6 188 74.5
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 6.7e-71 271.2 207 72.9
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 8.7e-71 270.8 208 68.8
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.5e-70 269.2 205 69.8
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 3.3e-70 268.9 217 66.4
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 4.3e-70 268.5 205 70.7
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 4.3e-70 268.5 205 75.6
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 5.7e-70 268.1 202 73.3
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 5.7e-70 268.1 208 68.3
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.3e-69 266.9 188 74.5
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 3.7e-69 265.4 205 72.7
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 8.2e-69 264.2 205 72.2
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 2.4e-68 262.7 205 71.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 4.1e-68 261.9 204 70.1
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 4.1e-68 261.9 212 71.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 5.3e-68 261.5 209 71.3
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.5e-67 260.0 205 70.7
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.0e-67 259.6 193 71.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 2.0e-67 259.6 193 74.6
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 5.9e-67 258.1 205 67.3
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 5.9e-67 258.1 198 73.2
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 7.7e-67 257.7 192 74.5
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.0e-66 257.3 205 73.2
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.0e-66 257.3 200 72.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.0e-66 257.3 200 72.0
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.7e-66 256.5 205 70.2
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 3.8e-66 255.4 193 71.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 3.8e-66 255.4 205 64.9
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 3.8e-66 255.4 195 70.8
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 8.5e-66 254.2 193 74.6
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.1e-65 253.8 207 66.7
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.9e-65 253.1 203 67.5
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 4.2e-65 251.9 208 66.3
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.2e-65 251.9 200 68.0
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 5.5e-65 251.5 216 64.8
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 5.5e-65 251.5 181 75.1
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 5.5e-65 251.5 194 72.2
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.1e-64 249.6 208 69.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.1e-64 249.6 208 69.7
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 3.6e-64 248.8 187 72.7
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 4.6e-64 248.4 125 92.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 4.6e-64 248.4 125 92.8
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 6.1e-64 248.1 208 65.4
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-63 246.1 208 69.2
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 2.3e-63 246.1 203 67.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 3.9e-63 245.4 206 65.5
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 5.1e-63 245.0 198 66.7
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.1e-62 243.8 188 72.9
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 4.4e-62 241.9 219 65.3
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 7.4e-62 241.1 205 66.3
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.3e-61 240.4 200 69.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 2.2e-61 239.6 205 69.3
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.1e-60 237.3 189 65.6
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.4e-60 236.9 188 71.8
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.4e-60 236.9 150 78.7
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-60 236.9 150 78.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.4e-60 236.1 206 70.4
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 4.1e-60 235.3 205 68.3
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.5e-59 233.4 207 65.7
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-59 233.4 150 78.0
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.3e-58 230.3 151 74.8
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 3.2e-57 225.7 209 65.6
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.2e-57 224.6 148 77.0
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.2e-57 224.6 192 67.2
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 9.4e-57 224.2 127 80.3
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.4e-55 220.3 206 64.1
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.0e-54 216.5 203 57.6
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.0e-54 216.5 190 64.2
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 6.3e-53 211.5 129 77.5
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.1e-52 208.8 157 72.6
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.0e-51 206.5 116 80.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.9e-50 202.6 196 63.3
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.8e-50 202.2 160 65.0
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 1.6e-48 196.8 161 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 2.7e-48 196.1 121 76.9
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 6.1e-48 194.9 206 58.7
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 1.5e-46 190.3 104 84.6
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.3e-45 187.2 106 82.1
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.8e-45 186.0 91 93.4
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.8e-34 149.1 82 81.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.1e-32 141.7 213 46.5
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 2.0e-30 136.7 123 67.5
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 7.5e-30 134.8 123 57.7
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 8.3e-29 131.3 101 57.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 5.6e-25 118.6 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 5.2e-23 112.1 93 54.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.8e-20 103.6 208 46.2
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.6e-19 100.5 103 47.6
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-16 90.9 83 55.4
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.2e-13 80.1 61 65.6
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 4.9e-13 79.0 135 37.0
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 6.0e-11 72.0 85 47.1
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.9e-10 69.3 34 88.2
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.1e-07 59.7 110 43.6
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.1e-07 59.7 86 54.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 8.9e-07 58.2 84 42.9
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.8e-06 55.5 34 70.6


User provided reference genes

Program Settings