Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 2147.1 1064 100.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 2090.8 1064 97.0
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 2073.9 1064 96.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1758.0 1054 80.7
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1753.4 1064 80.1
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1736.1 1056 79.8
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1732.6 1055 80.0
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1709.5 1049 79.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1690.2 1057 78.1
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1667.5 1055 76.9
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1666.7 1056 77.0
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1634.0 1057 76.5
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1464.1 1054 68.1
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1459.1 1052 68.3
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1454.1 1057 66.4
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1453.3 1059 66.2
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1440.6 1075 66.4
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1439.5 1051 65.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1431.8 1060 66.5
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1422.1 1087 65.8
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1421.4 1053 65.2
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1419.8 1036 66.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1059 65.3
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1055 65.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1414.8 1061 64.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1409.0 1058 64.1
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1059 64.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1399.8 1053 65.2
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1399.4 1056 66.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1397.9 1051 64.5
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1395.2 1066 64.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1391.3 1064 63.3
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1389.4 1062 63.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1377.5 1069 63.0
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1372.5 1051 64.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1372.5 1066 62.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1056 63.4
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1370.5 1057 64.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1059 64.4
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1060 63.4
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1051 63.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1358.6 1056 64.2
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1356.3 1066 63.8
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1355.1 1054 62.5
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1354.7 1066 63.6
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1351.7 1058 62.4
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1350.9 1051 62.9
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1344.7 1077 61.5
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1342.4 1054 62.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1335.1 1052 62.8
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1332.0 1052 62.7
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1325.8 1072 62.1
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1070 59.3
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1052 62.5
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1323.1 1052 62.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1319.3 1054 61.7
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1315.1 1091 60.2
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1313.1 1173 57.6
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1072 59.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1282.3 1071 60.6
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1278.1 1056 59.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1072 58.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1273.1 1094 58.0
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1270.4 1108 57.9
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1270.0 1056 60.1
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1268.8 1059 58.8
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1261.5 1065 58.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1089 57.5
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1024 60.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1259.2 1064 57.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1064 59.1
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1252.7 1114 57.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1249.2 1053 57.7
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1247.6 1088 57.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1233.0 1140 54.9
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1054 57.5
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1216.4 1051 58.6
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1208.4 1037 57.2
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1202.6 1055 56.8
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1199.9 1055 56.6
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1184.1 1039 56.7
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1180.2 1058 55.8
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1162.9 860 64.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1161.4 1053 56.0
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1157.5 1181 52.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1152.9 1061 55.4
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1148.7 1066 55.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1126.3 1142 51.9
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 0.0e+00 1115.1 687 78.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1100.1 1058 52.1
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1085.5 1043 52.8
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 7.2e-302 1040.8 870 58.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.2e-296 1023.5 1061 51.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.0e-283 979.5 1029 48.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-281 973.8 900 56.1
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 3.0e-276 955.7 889 56.2
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.1e-246 857.4 1070 44.5
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 7.9e-232 808.1 1073 42.1
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.1e-212 744.6 739 50.9
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 8.5e-210 734.9 724 53.9
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 9.4e-209 731.5 709 51.8
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.1e-204 716.1 711 50.4
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.4e-199 701.0 545 63.1
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.7e-199 698.7 825 47.2
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.7e-192 676.8 512 64.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 6.1e-192 675.6 1000 38.6
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.3e-191 673.7 673 51.4
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.6e-187 660.2 839 42.7
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 2.5e-185 653.7 505 63.4
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.7e-176 623.6 1060 38.1
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 6.8e-175 619.0 602 54.0
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.7e-171 607.1 493 60.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.3e-170 604.0 857 39.2
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.4e-164 583.9 509 57.6
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 6.0e-155 552.7 340 78.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 3.9e-154 550.1 442 61.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.7e-138 498.0 382 63.1
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.6e-121 439.9 362 60.5
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 4.0e-119 433.7 856 33.8
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.2e-118 432.2 450 47.8
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 4.3e-113 413.7 374 62.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.4e-111 407.9 476 53.6
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.9e-105 388.3 349 57.0
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.9e-93 347.8 1133 27.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 9.4e-92 342.8 288 62.5
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.1e-75 288.5 262 56.9
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.3e-73 281.2 211 65.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 5.3e-71 273.9 398 43.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.9e-68 265.4 170 75.9
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.7e-64 251.1 177 66.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.4e-63 249.2 984 25.9
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.6e-59 235.7 209 55.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 6.1e-59 233.8 228 51.8
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.0e-58 233.0 272 46.3
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 2.5e-52 211.8 1206 24.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.7e-51 207.6 318 39.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 8.0e-43 180.3 126 68.3
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.4e-41 174.5 214 44.4
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 2.0e-38 165.6 159 57.9
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-35 155.2 332 32.5
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.8e-34 150.6 113 66.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 4.4e-33 147.9 154 51.3
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.4e-31 142.9 190 40.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 7.1e-31 140.6 86 76.7
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 3.6e-27 128.3 70 87.1
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.3e-26 125.6 71 80.3
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-25 122.9 99 63.6
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 9.9e-25 120.2 107 58.9
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 4.9e-24 117.9 164 39.6
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 5.4e-23 114.4 69 76.8
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.9e-21 108.2 127 48.0
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 4.3e-20 104.8 103 54.4
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-14 84.7 108 40.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 5.6e-12 77.8 91 45.1
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 2.6e-09 68.9 45 68.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 3.2e-07 62.0 75 45.3
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.7e-06 58.9 75 46.7


User provided reference genes

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