Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-245 852.4 435 100.0
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.5e-240 835.1 435 98.6
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 9.1e-227 790.0 435 92.6
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.7e-223 778.5 435 91.3
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.9e-222 774.6 435 89.7
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.3e-221 771.5 436 88.8
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.3e-217 759.6 435 88.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 8.0e-215 750.4 434 88.9
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.9e-214 748.0 439 87.5
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.9e-214 748.0 439 87.5
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 6.7e-214 747.3 435 88.3
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.7e-212 742.7 440 87.5
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 8.2e-212 740.3 437 85.4
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.4e-211 739.6 430 87.0
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 8.8e-206 720.3 433 83.6
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.3e-204 716.5 430 84.4
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.2e-204 715.7 439 83.1
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.2e-204 715.7 430 84.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 3.5e-202 708.4 434 80.6
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.5e-202 708.0 431 81.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.0e-201 706.8 423 83.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.0e-201 706.8 427 83.6
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.3e-201 706.4 423 83.7
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.3e-201 706.4 434 80.2
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.7e-201 706.1 427 83.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.7e-201 706.1 427 83.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-201 706.1 432 82.9
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.8e-201 704.9 427 83.4
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 3.8e-201 704.9 431 83.3
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.0e-201 704.5 422 82.2
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 5.0e-201 704.5 427 83.4
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 6.5e-201 704.1 439 83.6
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 8.5e-201 703.7 427 83.1
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 8.5e-201 703.7 434 83.2
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-200 703.0 427 83.4
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-200 703.0 434 80.2
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.9e-200 702.6 427 83.4
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-200 702.6 434 80.2
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.9e-200 702.6 434 80.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.5e-200 702.2 424 83.3
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-200 702.2 426 83.1
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.5e-200 702.2 434 81.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.2e-200 701.8 427 83.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 5.5e-200 701.0 427 83.1
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 5.5e-200 701.0 427 83.1
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 5.5e-200 701.0 427 83.1
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 5.5e-200 701.0 431 83.8
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 9.4e-200 700.3 427 83.1
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 9.4e-200 700.3 439 80.6
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.1e-199 699.1 425 82.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.7e-199 698.7 426 82.9
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 2.7e-199 698.7 431 82.1
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 4.7e-199 698.0 420 82.9
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 4.7e-199 698.0 420 82.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 6.1e-199 697.6 424 82.1
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.0e-199 697.2 423 81.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.0e-199 697.2 423 81.8
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.0e-199 697.2 434 81.8
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.0e-198 696.8 426 82.9
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.0e-198 695.3 431 81.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.0e-197 692.6 429 79.7
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.6e-197 692.2 423 82.0
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 5.7e-197 691.0 429 79.5
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 9.8e-197 690.3 429 79.3
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.3e-196 687.6 421 81.7
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 6.3e-196 687.6 474 75.9
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-195 686.8 437 80.5
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.4e-195 686.4 438 80.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.4e-195 686.4 439 80.0
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.4e-195 685.6 434 80.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.4e-195 685.6 397 85.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 4.1e-195 684.9 421 81.5
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.1e-195 684.9 430 80.9
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.6e-194 682.9 392 85.2
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-194 682.6 465 76.8
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 7.7e-194 680.6 436 80.5
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 7.7e-194 680.6 426 79.3
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 7.7e-194 680.6 430 80.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 7.7e-194 680.6 399 85.2
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.0e-193 680.2 397 85.1
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.3e-193 679.9 432 80.6
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.3e-193 679.1 434 80.4
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.9e-193 678.7 430 78.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.6e-193 677.6 431 80.7
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 8.6e-193 677.2 434 78.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 8.6e-193 677.2 429 80.7
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 8.6e-193 677.2 426 81.2
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 8.6e-193 677.2 432 78.2
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 8.6e-193 677.2 431 80.7
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.9e-192 676.0 428 79.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.5e-192 675.6 424 79.2
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.3e-192 675.2 434 80.2
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 4.2e-192 674.9 412 82.5
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 7.2e-192 674.1 432 80.1
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 9.5e-192 673.7 435 79.1
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 9.5e-192 673.7 399 83.7
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.6e-191 672.9 454 77.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.6e-191 672.9 431 77.5
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.1e-191 672.5 399 84.0
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.8e-191 672.2 427 79.4
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.6e-191 671.8 422 81.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 6.1e-191 671.0 434 78.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 8.0e-191 670.6 426 80.5
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.0e-190 670.2 438 76.3
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-190 669.8 426 80.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.2e-190 667.9 431 76.6
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.0e-189 666.0 425 80.0
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.8e-188 662.1 435 77.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 4.9e-188 661.4 426 79.1
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 4.9e-188 661.4 429 79.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.2e-187 657.1 427 77.3
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.6e-186 656.4 428 77.8
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.5e-186 654.8 437 76.7
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 7.8e-186 654.1 350 93.4
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 8.6e-185 650.6 426 78.4
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 6.8e-182 641.0 432 76.9
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 6.8e-182 641.0 426 75.8
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 5.8e-181 637.9 399 80.5
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 2.2e-180 636.0 515 66.6
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.9e-180 634.8 422 77.5
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 6.4e-180 634.4 552 63.0
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.4e-179 633.3 432 75.7
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 3.2e-179 632.1 387 80.4
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.0e-177 625.5 422 76.5
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.9e-177 625.2 420 76.0
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.6e-177 624.4 424 74.5
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 7.3e-176 620.9 361 87.5
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 3.6e-175 618.6 394 76.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 2.3e-174 615.9 421 75.1
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.2e-172 609.4 382 79.8
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.1e-171 607.1 442 73.3
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.4e-171 604.7 436 70.2
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 7.0e-171 604.4 405 75.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.7e-169 599.7 382 75.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 6.8e-166 587.8 347 86.2
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.8e-159 565.8 361 78.1
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 5.2e-158 561.6 336 84.2
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.5e-157 560.1 353 81.9
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 2.2e-156 556.2 383 71.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.2e-154 550.4 349 81.1
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 5.8e-149 531.6 322 80.4
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.9e-147 526.6 371 71.2
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.9e-147 526.6 426 66.7
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.6e-146 523.5 411 65.9
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.0e-145 519.2 346 76.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.9e-145 518.8 428 65.9
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.2e-141 507.3 366 70.8
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 7.6e-133 478.0 261 87.7
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.2e-123 446.0 331 67.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.4e-118 430.6 269 81.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.0e-117 426.8 293 74.4
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 2.2e-116 423.3 383 60.1
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.3e-105 386.7 231 84.8
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.4e-94 350.1 237 72.2
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.4e-86 323.6 181 89.5
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.2e-85 321.2 231 71.9
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.5e-84 315.5 190 82.6
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.3e-81 307.0 365 45.8
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 8.8e-81 305.1 355 50.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 8.3e-71 271.9 157 81.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.6e-66 257.7 220 66.4
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.3e-63 248.1 190 64.2
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.3e-63 248.1 190 64.2
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 3.2e-62 243.4 146 82.2
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-59 233.8 244 58.2
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 3.9e-44 183.3 99 90.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.1e-41 175.3 150 63.3
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.8e-34 150.6 220 47.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.1e-30 136.0 294 37.1
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.3e-28 131.7 82 80.5
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 6.9e-25 119.4 89 71.9
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.2e-22 110.5 60 90.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-19 101.3 90 57.8
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.9e-19 101.3 59 86.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.9e-19 101.3 59 86.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 3.7e-18 97.1 79 65.8
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.0e-16 91.3 45 93.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.8e-16 89.7 48 91.7
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.7e-13 80.9 46 78.3
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 1.3e-10 72.0 74 52.7
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 3.7e-10 70.5 74 54.1
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 3.1e-09 67.4 74 52.7
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 9.0e-09 65.9 43 76.7
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 5.9e-08 63.2 44 75.0
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.4e-06 58.5 28 82.1


User provided reference genes

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