Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.7e-38 161.4 75 100.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.5e-25 117.9 73 83.6
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 8.0e-22 106.7 73 74.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.0e-21 104.8 73 72.6
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.0e-21 104.8 73 71.2
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.9e-21 104.4 73 71.2
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.9e-21 104.4 73 72.6
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.6e-20 101.7 73 69.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 9.7e-20 99.8 74 66.2
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 9.7e-20 99.8 74 66.2
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 9.7e-20 99.8 74 66.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 4.8e-19 97.4 74 64.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.1e-18 96.3 74 63.5
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.1e-18 94.7 72 62.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.1e-18 94.4 72 62.5
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.1e-18 94.4 72 62.5
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.1e-18 94.4 72 62.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.0e-18 93.6 73 61.6
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 7.0e-18 93.6 72 62.5
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.6e-17 92.4 72 61.1
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.0e-17 92.0 72 61.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.0e-17 92.0 72 61.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.6e-17 91.7 76 61.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.5e-17 91.3 73 60.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.5e-17 91.3 72 61.1
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 3.5e-17 91.3 72 61.1
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 4.5e-17 90.9 73 60.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 4.5e-17 90.9 73 60.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 4.5e-17 90.9 72 62.5
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.9e-17 90.5 72 61.1
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.9e-17 90.5 72 61.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 7.7e-17 90.1 72 59.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.7e-16 89.0 72 59.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 2.9e-16 88.2 73 57.5
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 3.8e-16 87.8 72 61.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 5.0e-16 87.4 73 58.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.0e-16 87.4 72 56.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.0e-16 87.4 72 59.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.0e-16 87.4 72 59.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.0e-16 87.4 71 57.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.0e-16 87.4 72 55.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 6.5e-16 87.0 72 59.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 6.5e-16 87.0 72 58.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 8.5e-16 86.7 72 56.9
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.5e-16 86.7 72 55.6
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.1e-15 86.3 72 58.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.1e-15 86.3 72 58.3
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.1e-15 86.3 72 58.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.1e-15 86.3 72 58.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-15 86.3 72 58.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.5e-15 85.9 73 58.9
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.9e-15 85.5 102 47.1
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.9e-15 85.5 71 60.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.9e-15 85.5 73 58.9
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-15 85.5 72 58.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.9e-15 85.5 72 55.6
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.9e-15 85.5 72 56.9
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 54.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 56.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-15 85.1 73 64.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 55.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 56.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 55.6
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.5e-15 85.1 71 60.6
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 56.9
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.5e-15 85.1 72 59.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-15 84.7 72 54.2
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.2e-15 84.7 72 54.2
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.2e-15 84.7 71 56.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.2e-15 84.7 72 55.6
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.2e-15 84.7 72 55.6
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.2e-15 84.7 71 59.2
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 54.2
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 54.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 55.6
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.2e-15 84.3 72 56.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 54.2
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-15 84.0 71 54.9
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 54.2
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 54.2
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 5.5e-15 84.0 71 54.9
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 5.5e-15 84.0 73 56.2
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 56.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 56.9
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 5.5e-15 84.0 72 56.9
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 7.2e-15 83.6 74 56.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 7.2e-15 83.6 72 55.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.2e-15 83.6 72 55.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 7.2e-15 83.6 72 55.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.2e-15 83.6 72 55.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 7.2e-15 83.6 72 54.2
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 9.4e-15 83.2 71 59.2
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 9.4e-15 83.2 72 55.6
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 9.4e-15 83.2 72 55.6
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 9.4e-15 83.2 71 56.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.2e-14 82.8 72 56.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.2e-14 82.8 72 55.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.2e-14 82.8 71 57.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-14 82.4 70 54.3
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-14 82.4 70 54.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.6e-14 82.4 73 54.8
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.6e-14 82.4 72 55.6
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.6e-14 82.4 72 52.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-14 82.4 72 52.8
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-14 82.4 72 55.6
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.1e-14 82.0 71 57.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.1e-14 82.0 71 56.3
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.1e-14 82.0 71 56.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.1e-14 82.0 72 55.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 55.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 54.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 54.2
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 54.2
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 54.2
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.7e-14 81.6 72 54.2
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.6e-14 81.3 73 61.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.6e-14 81.3 71 57.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 4.7e-14 80.9 70 55.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 8.0e-14 80.1 72 52.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-13 79.3 44 84.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-13 79.3 72 54.2
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.4e-13 79.3 71 53.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.8e-13 79.0 72 51.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 2.3e-13 78.6 71 54.9
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.3e-13 78.6 72 52.8
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.0e-13 77.8 71 54.9
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.0e-13 77.8 72 52.8
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.0e-13 77.8 72 52.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 4.0e-13 77.8 72 52.8
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.2e-13 77.4 72 55.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.8e-13 77.0 73 52.1
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 8.8e-13 76.6 71 50.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.2e-12 76.3 72 55.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.2e-12 76.3 72 55.6
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.2e-12 76.3 72 52.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.6e-12 75.1 68 54.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 4.4e-12 74.3 72 48.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.2e-11 72.0 93 43.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-10 69.7 69 50.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.4e-10 68.6 73 49.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.4e-10 68.6 72 50.0
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.1e-10 68.2 62 58.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 9.1e-10 66.6 67 50.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-09 65.9 71 42.3
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.5e-09 64.3 72 45.8
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.9e-09 63.9 93 41.9
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.0e-08 63.2 50 58.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-08 62.4 52 53.8
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-08 62.4 46 60.9
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.2e-08 62.0 49 55.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 6.5e-08 60.5 140 30.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.5e-07 58.5 46 54.3
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.2e-07 58.2 46 54.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.5e-07 57.4 46 54.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-06 55.8 36 83.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 4.7e-06 54.3 46 52.2


User provided reference genes

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