Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 3.9e-88 328.2 172 100.0
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 2.5e-87 325.5 172 98.8
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 4.3e-63 245.0 179 78.2
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.6e-62 243.0 175 79.4
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.6e-62 243.0 179 77.7
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.6e-62 243.0 178 78.1
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.1e-62 242.7 180 76.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 4.7e-62 241.5 180 75.6
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 6.2e-62 241.1 175 76.6
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 6.2e-62 241.1 180 77.2
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.8e-61 239.6 175 78.3
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 6.9e-61 237.7 180 75.0
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.2e-60 236.9 177 74.0
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.2e-60 236.9 180 73.9
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.2e-60 236.9 181 75.1
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 2.6e-60 235.7 175 74.9
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.6e-60 235.7 179 75.4
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.6e-60 235.7 180 74.4
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 3.4e-60 235.3 180 73.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.8e-60 234.6 176 75.0
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 7.6e-60 234.2 178 73.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 2.9e-59 232.3 178 73.0
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.9e-59 232.3 179 73.7
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.8e-59 231.9 180 74.4
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 4.9e-59 231.5 180 75.0
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.9e-59 231.5 173 75.7
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 6.4e-59 231.1 177 73.4
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.1e-58 230.3 174 73.0
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 3.2e-58 228.8 181 72.9
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 74.4
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 4.2e-58 228.4 175 73.7
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.2e-58 228.4 179 72.6
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.4e-58 228.0 179 72.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.4e-58 228.0 180 73.3
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.2e-57 226.9 178 71.9
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.6e-57 226.5 180 72.2
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.1e-57 226.1 173 73.4
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.1e-57 226.1 177 72.9
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 6.0e-57 224.6 177 72.9
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.8e-57 224.2 176 71.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.8e-57 224.2 176 71.0
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 7.8e-57 224.2 181 71.8
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.0e-56 223.8 175 68.6
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.0e-56 223.8 179 71.5
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.7e-56 223.0 176 71.6
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 2.3e-56 222.6 181 71.8
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 2.3e-56 222.6 175 70.9
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 2.3e-56 222.6 175 70.9
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 2.3e-56 222.6 175 72.6
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 2.3e-56 222.6 177 69.5
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.9e-56 221.9 178 71.9
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 3.9e-56 221.9 180 71.7
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.1e-56 221.5 186 69.9
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 6.6e-56 221.1 174 69.5
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 8.7e-56 220.7 175 73.1
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-55 220.3 180 70.6
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.1e-55 220.3 175 74.9
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.9e-55 219.5 178 70.2
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.9e-55 219.5 176 68.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.3e-55 218.8 172 72.1
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 4.3e-55 218.4 181 65.7
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 4.3e-55 218.4 175 73.7
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 5.6e-55 218.0 177 72.9
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 7.3e-55 217.6 175 72.0
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 9.6e-55 217.2 174 69.5
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.6e-54 216.5 176 71.0
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.6e-54 216.5 182 68.7
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.1e-54 216.1 177 70.6
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 2.1e-54 216.1 176 69.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.8e-54 215.7 179 69.8
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.6e-54 215.3 175 69.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 3.6e-54 215.3 172 69.2
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 4.8e-54 214.9 175 67.4
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 8.1e-54 214.2 172 68.0
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 8.1e-54 214.2 176 68.8
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.1e-53 213.8 173 68.2
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.1e-53 213.8 174 67.8
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 1.4e-53 213.4 179 67.6
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.4e-53 212.6 175 68.6
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.4e-53 212.6 175 69.7
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 4.0e-53 211.8 176 67.6
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 5.3e-53 211.5 173 67.6
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 5.3e-53 211.5 173 69.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 5.3e-53 211.5 173 69.4
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 1.5e-52 209.9 176 67.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-52 209.9 176 67.6
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-52 209.9 176 67.6
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.5e-52 209.9 151 74.8
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.5e-52 209.9 173 67.1
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.5e-52 209.9 172 68.0
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-52 209.5 176 68.2
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-52 209.5 176 68.2
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.6e-52 209.1 176 67.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 2.6e-52 209.1 176 67.6
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 3.4e-52 208.8 175 68.0
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 4.5e-52 208.4 173 67.6
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 5.8e-52 208.0 176 67.0
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 5.8e-52 208.0 171 68.4
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 7.6e-52 207.6 173 70.5
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.8e-51 205.3 183 64.5
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 8.4e-51 204.1 176 66.5
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.9e-50 203.0 173 66.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 3.2e-50 202.2 173 68.2
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.2e-49 200.3 175 68.0
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.2e-49 200.3 177 66.1
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.2e-49 200.3 175 68.0
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.8e-48 196.4 174 62.6
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 6.7e-48 194.5 175 65.1
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 4.3e-47 191.8 174 60.3
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 2.1e-46 189.5 119 77.3
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 2.1e-46 189.5 177 62.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.8e-45 186.4 117 79.5
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.0e-44 183.0 180 62.2
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.0e-44 183.0 110 80.0
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 2.6e-44 182.6 117 76.9
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-42 176.8 172 60.5
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.4e-42 176.8 172 60.5
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.4e-42 176.8 110 77.3
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 4.3e-39 165.2 149 68.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 3.7e-38 162.2 140 60.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 2.4e-37 159.5 151 69.5
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 4.5e-36 155.2 147 65.3
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 2.2e-35 152.9 143 65.7
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.5e-34 149.4 82 82.9
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 5.5e-34 148.3 146 64.4
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 2.3e-32 142.9 129 58.1
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 2.3e-32 142.9 146 62.3
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-29 132.1 74 83.8
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 9.0e-29 131.0 74 82.4
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.2e-28 130.6 72 84.7
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-28 128.6 74 81.1
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 2.2e-27 126.3 133 66.2
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 6.1e-25 118.2 123 51.2
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 8.7e-24 114.4 176 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 9.7e-23 110.9 87 66.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.3e-22 110.5 133 48.1
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 7.7e-20 101.3 74 66.2
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 3.9e-16 89.0 135 45.2
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 3.9e-16 89.0 79 57.0
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.3e-14 84.0 132 42.4
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 2.8e-14 82.8 119 54.6
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.1e-13 80.9 106 54.7
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 6.9e-13 78.2 109 55.0
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-10 70.1 104 52.9
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.9e-10 70.1 108 55.6
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 8.8e-08 61.2 30 83.3


User provided reference genes

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