Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-54 215.7 107 100.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-54 215.7 107 100.0
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 5.4e-40 167.5 110 80.9
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 5.1e-38 161.0 107 78.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 8.6e-38 160.2 108 79.6
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-37 159.8 107 77.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 7.3e-37 157.1 109 71.6
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 8.1e-36 153.7 107 72.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.4e-35 152.9 109 70.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.3e-33 146.4 113 69.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.7e-33 146.0 108 65.7
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 8.4e-33 143.7 113 69.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.4e-32 142.1 111 69.4
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 3.2e-32 141.7 106 69.8
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.2e-31 139.8 107 68.2
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 4.6e-31 137.9 97 75.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.7e-30 136.0 108 65.7
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.3e-30 135.6 109 63.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.5e-29 132.9 109 67.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.3e-29 130.6 122 55.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.6e-29 130.2 109 57.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.8e-28 127.9 111 59.5
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.8e-28 127.9 111 59.5
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.8e-28 127.9 111 59.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.4e-27 125.6 109 56.9
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 4.0e-27 124.8 111 56.8
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 9.0e-27 123.6 113 57.5
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.5e-26 122.9 112 59.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.0e-26 122.5 112 56.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.6e-26 122.1 109 56.0
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.8e-25 118.2 110 55.5
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 4.9e-25 117.9 107 60.7
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.9e-25 117.9 108 57.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.9e-25 117.9 108 57.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.9e-25 117.9 108 57.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.4e-25 117.5 109 56.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.4e-25 117.5 109 56.0
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.4e-25 117.5 111 56.8
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 8.4e-25 117.1 107 55.1
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.1e-24 116.7 111 52.3
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.1e-24 116.7 110 58.2
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.9e-24 115.9 109 57.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.4e-24 115.5 111 56.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.2e-24 114.8 113 59.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.2e-24 114.8 113 59.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.2e-24 114.8 110 51.8
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.4e-24 114.4 108 55.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.1e-24 114.0 109 53.2
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 9.3e-24 113.6 110 53.6
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.2e-23 113.2 107 55.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.1e-23 112.5 111 56.8
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 3.5e-23 111.7 110 53.6
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 4.6e-23 111.3 107 57.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 6.0e-23 110.9 108 54.6
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 7.9e-23 110.5 110 52.7
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-22 110.2 112 55.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.8e-22 109.4 114 52.6
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.8e-22 109.4 109 49.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 51.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 57.4
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.5e-21 106.3 120 51.7
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.5e-21 106.3 111 51.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.9e-21 105.9 113 53.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.5e-21 105.5 97 53.6
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.3e-21 105.1 109 54.1
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.3e-21 104.8 113 52.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 9.6e-21 103.6 108 49.1
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 9.6e-21 103.6 106 53.8
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-20 103.2 109 52.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.3e-20 103.2 107 53.3
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.8e-20 102.1 94 58.5
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.7e-20 101.7 100 52.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.4e-19 99.0 108 47.2
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.4e-19 99.0 91 56.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.1e-19 98.6 108 51.9
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.1e-19 98.6 90 55.6
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.5e-18 96.3 111 49.5
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.5e-18 96.3 111 48.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.0e-18 95.9 109 45.9
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.6e-18 95.5 101 48.5
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 4.5e-18 94.7 78 62.8
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 4.5e-18 94.7 114 44.7
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 5.8e-18 94.4 99 52.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.8e-18 94.4 110 50.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-17 93.2 105 46.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.3e-17 93.2 124 46.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.7e-17 92.8 114 43.9
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.9e-17 92.0 112 50.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 6.4e-17 90.9 95 53.7
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 8.4e-17 90.5 108 49.1
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.2e-16 88.2 107 45.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.2e-16 88.2 107 45.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 7.1e-16 87.4 116 44.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 7.1e-16 87.4 100 50.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.1e-16 87.4 116 42.2
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.3e-16 87.0 107 44.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.6e-15 86.3 113 46.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.7e-15 85.5 116 44.8
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.7e-15 85.5 100 48.0
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.5e-15 85.1 116 44.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 7.9e-15 84.0 111 44.1
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 7.9e-15 84.0 111 44.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.9e-15 84.0 99 50.5
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.0e-14 83.6 108 44.4
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.0e-14 83.6 112 44.6
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.3e-14 83.2 103 47.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.3e-14 83.2 109 44.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.3e-14 82.4 111 43.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.3e-14 82.4 124 44.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.0e-14 82.0 107 42.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.0e-14 82.0 107 43.9
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-14 81.6 111 45.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.1e-14 81.3 109 43.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.1e-14 81.3 107 42.1
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 6.7e-14 80.9 108 46.3
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 8.7e-14 80.5 116 42.2
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.7e-14 80.5 110 44.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 8.7e-14 80.5 97 45.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-13 80.1 107 42.1
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-13 80.1 107 42.1
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.1e-13 80.1 88 51.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.1e-13 80.1 97 42.3
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.5e-13 79.7 79 48.1
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 4.3e-13 78.2 107 41.1
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.3e-13 78.2 110 44.5
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 5.6e-13 77.8 107 41.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 5.6e-13 77.8 107 41.1
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 9.6e-13 77.0 110 42.7
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.6e-12 76.3 102 43.1
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.8e-12 75.5 107 38.3
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.8e-12 75.5 112 42.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 40.2
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.8e-11 72.8 108 40.7
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.8e-11 72.8 81 50.6
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 5.3e-11 71.2 66 48.5
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 5.3e-11 71.2 110 41.8
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.2e-10 70.1 97 43.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.5e-10 69.7 103 40.8
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.6e-10 68.9 108 38.0
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 1.0e-09 67.0 51 68.6
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 8.4e-09 63.9 99 39.4
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.1e-08 63.5 112 37.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.4e-08 63.2 94 42.6
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.2e-08 62.0 106 37.7
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 7.1e-08 60.8 119 40.3
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 7.1e-08 60.8 109 38.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.6e-07 58.2 94 39.4
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.3e-06 55.8 108 37.0


User provided reference genes

Program Settings