Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 3.6e-188 661.4 324 100.0
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 5.3e-171 604.4 324 93.5
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 6.4e-169 597.4 324 92.0
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.7e-166 589.3 324 91.4
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.6e-146 522.3 323 80.8
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 4.9e-145 518.1 325 78.8
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 8.4e-145 517.3 325 79.1
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.1e-144 516.9 324 78.4
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.9e-144 516.2 325 79.1
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.2e-143 513.5 322 78.0
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.6e-143 513.1 322 78.3
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 2.1e-143 512.7 325 78.2
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.0e-142 510.4 322 77.0
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 1.0e-142 510.4 322 77.0
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 2.2e-137 492.7 324 72.8
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.1e-135 486.1 325 72.9
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 6.1e-135 484.6 324 72.5
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 7.9e-135 484.2 327 74.3
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.5e-133 479.9 325 73.2
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 4.3e-133 478.4 323 71.2
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 7.4e-133 477.6 326 74.2
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.8e-132 475.7 326 73.9
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.8e-132 475.7 324 70.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 8.2e-132 474.2 325 70.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 2.4e-131 472.6 325 70.2
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 5.3e-131 471.5 325 70.5
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 5.3e-131 471.5 325 72.6
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 5.3e-131 471.5 324 69.8
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 5.3e-131 471.5 326 72.7
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.4e-130 468.8 326 72.7
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 7.7e-130 467.6 325 69.2
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.9e-129 465.7 325 71.1
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 6.5e-129 464.5 324 70.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 8.5e-129 464.2 329 70.8
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.1e-128 463.8 326 70.2
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.4e-128 463.4 319 70.5
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.9e-128 463.0 321 69.5
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.5e-128 461.5 325 68.0
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 3.6e-127 458.8 326 68.4
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.6e-127 458.8 324 68.8
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.6e-127 458.8 324 68.8
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.0e-126 457.2 387 62.3
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.8e-126 454.1 324 70.1
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 4.4e-125 451.8 325 70.5
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 4.4e-125 451.8 324 67.3
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 5.7e-125 451.4 349 64.5
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.4e-125 451.1 324 68.2
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 9.7e-125 450.7 322 69.6
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.3e-124 450.3 324 67.3
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 6.3e-124 448.0 325 69.2
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.1e-123 447.2 325 69.2
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 3.1e-123 445.7 325 69.8
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 5.3e-123 444.9 325 69.8
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 2.0e-122 443.0 324 66.7
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.0e-121 440.7 321 68.5
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.7e-121 439.9 321 68.5
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 2.9e-121 439.1 321 67.6
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.8e-121 438.7 326 67.2
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 5.0e-121 438.3 292 71.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 6.5e-121 438.0 321 67.6
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 6.5e-121 438.0 326 66.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 3.2e-120 435.6 342 65.2
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 5.5e-120 434.9 320 67.5
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 5.5e-120 434.9 326 65.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 9.4e-120 434.1 295 71.9
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.2e-119 433.7 326 65.6
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.6e-119 433.3 323 65.0
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 4.7e-119 431.8 321 67.0
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 6.1e-119 431.4 322 68.0
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 8.0e-119 431.0 320 66.9
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.0e-118 430.6 321 66.7
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.4e-118 430.3 315 68.3
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.8e-118 429.9 321 63.6
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 2.3e-118 429.5 320 66.6
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 2.3e-118 429.5 321 66.7
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.3e-118 429.5 326 65.3
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 3.9e-118 428.7 326 66.0
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 8.8e-118 427.6 326 64.7
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.1e-117 427.2 324 65.4
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.5e-117 426.8 326 65.0
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.5e-117 426.8 326 66.6
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.3e-116 423.7 325 66.8
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.7e-116 423.3 322 66.5
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.1e-115 420.6 327 64.2
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.1e-115 420.6 327 64.2
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 4.1e-115 418.7 327 63.9
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.5e-114 415.6 321 61.4
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 5.9e-114 414.8 321 63.6
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.7e-113 413.3 321 62.6
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 6.5e-113 411.4 346 57.5
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 7.2e-112 407.9 322 64.6
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.7e-111 406.0 284 70.8
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 3.0e-110 402.5 359 58.2
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 8.8e-110 401.0 312 63.8
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 7.5e-109 397.9 324 63.3
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.8e-108 395.2 321 61.4
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 3.1e-107 392.5 313 59.1
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 5.5e-104 381.7 260 71.2
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.0e-102 377.5 281 66.5
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.2e-101 374.0 325 57.5
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.8e-100 368.6 256 70.3
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 8.6e-97 357.8 267 66.3
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 2.8e-92 342.8 322 54.7
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.7e-92 342.4 257 64.2
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 4.1e-91 339.0 324 54.9
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 4.3e-88 328.9 237 69.2
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.1e-83 314.3 315 50.2
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 3.2e-83 312.8 310 51.6
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 7.0e-83 311.6 227 67.0
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 2.4e-75 286.6 306 49.3
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 3.2e-75 286.2 305 48.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 2.8e-63 246.5 305 42.3
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.9e-61 238.0 147 75.5
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.5e-58 229.6 145 75.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 9.3e-51 204.9 196 50.0
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 1.6e-50 204.1 327 41.3
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 6.0e-50 202.2 305 38.4
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 8.7e-49 198.4 164 57.9
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 4.9e-44 182.6 96 92.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 9.3e-43 178.3 97 90.7
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 6.2e-39 165.6 149 59.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.0e-36 158.3 149 56.4
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 2.9e-36 156.8 200 47.5
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.5e-28 129.0 99 58.6
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.1e-22 109.8 66 77.3
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.5e-19 100.5 63 73.0
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.7e-15 86.7 64 60.9
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.2e-15 85.5 59 64.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.4e-14 84.7 83 50.6
Psat6g049160 Pisum sativum HOM05D006018 ORTHO05D320225 7.0e-06 55.8 37 70.3


User provided reference genes

Program Settings