Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.8e-141 504.2 254 100.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.8e-133 477.6 307 82.4
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.6e-127 459.5 263 89.4
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.8e-127 458.0 266 88.3
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.5e-125 453.0 273 86.1
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.5e-125 453.0 267 88.0
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.0e-125 452.6 266 87.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.2e-124 449.1 266 86.5
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.9e-123 446.0 266 86.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 5.5e-123 444.5 266 86.8
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.7e-122 442.2 266 85.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 3.5e-122 441.8 267 85.8
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.9e-122 440.7 269 85.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.9e-121 438.3 267 83.5
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 8.7e-121 437.2 266 83.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.9e-120 436.0 267 83.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-120 435.3 266 84.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.3e-120 435.3 267 84.6
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.6e-119 433.0 265 83.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 4.8e-119 431.4 267 82.8
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.8e-119 431.4 267 83.5
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.8e-119 431.4 267 83.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.8e-118 429.5 265 83.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.1e-118 428.7 259 85.3
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 5.3e-118 427.9 265 82.3
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.9e-118 427.6 268 83.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 9.0e-118 427.2 265 81.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.5e-117 426.4 267 82.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.5e-117 426.4 267 83.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.4e-117 425.2 267 81.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.4e-117 425.2 267 83.1
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 4.5e-117 424.9 266 82.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.9e-116 422.2 267 80.9
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.9e-116 422.2 265 82.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.9e-115 419.5 265 82.6
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.9e-115 419.5 267 79.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.7e-114 415.6 266 80.5
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.6e-114 414.8 267 82.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 7.9e-114 414.1 267 79.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 7.9e-114 414.1 268 80.2
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 7.9e-114 414.1 259 81.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.0e-113 413.7 262 81.7
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.8e-113 412.9 264 79.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.9e-113 411.8 267 80.1
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 3.9e-113 411.8 267 79.4
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 6.7e-113 411.0 264 79.5
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.7e-113 410.6 254 84.6
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.7e-113 410.6 265 81.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-112 409.8 264 79.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.5e-112 409.8 263 79.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.9e-112 409.5 264 79.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.5e-112 409.1 267 79.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.5e-112 409.1 264 78.4
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.5e-112 409.1 255 80.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 3.3e-112 408.7 255 80.4
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.3e-112 408.7 273 79.9
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.3e-112 408.7 264 79.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 4.3e-112 408.3 267 79.0
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-112 407.9 267 79.4
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.7e-112 407.9 264 78.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.7e-112 407.9 267 78.3
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 7.4e-112 407.5 267 79.0
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.3e-111 406.8 259 79.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-111 406.8 267 79.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-111 406.4 267 78.7
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-111 406.0 260 79.2
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.8e-111 405.6 263 79.5
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.7e-111 405.2 265 78.1
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.8e-111 404.8 266 80.1
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.8e-111 404.8 264 78.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 6.3e-111 404.4 267 77.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 8.2e-111 404.1 249 83.1
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 255 79.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-110 403.3 260 78.8
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.8e-110 402.9 265 78.5
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.8e-110 402.9 260 79.6
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 5.3e-110 401.4 267 79.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.0e-109 399.4 266 77.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.4e-109 398.7 269 76.2
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.9e-109 397.9 293 72.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 5.9e-109 397.9 250 82.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.9e-108 395.6 268 77.2
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.0e-108 394.8 265 77.4
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.5e-108 394.4 264 77.3
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.4e-107 393.3 284 74.6
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.4e-107 393.3 274 77.4
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.5e-106 388.7 261 77.0
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.9e-106 387.5 261 76.6
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.8e-105 386.3 250 79.2
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 5.1e-105 384.8 237 81.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.7e-105 384.0 262 75.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.1e-104 383.6 250 79.2
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.9e-104 382.9 267 74.5
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.5e-104 382.5 265 75.8
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.3e-104 381.7 251 77.7
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.8e-103 379.0 254 76.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-103 378.3 308 68.2
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 6.3e-103 377.9 248 79.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 6.9e-102 374.4 258 75.2
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.0e-101 372.9 268 72.4
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 4.5e-101 371.7 282 73.4
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 5.9e-101 371.3 280 71.8
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.0e-100 370.5 260 76.2
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.7e-100 369.8 270 72.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-99 367.1 248 76.6
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.9e-98 360.9 264 70.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.7e-97 357.8 248 75.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-96 356.7 268 69.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 4.3e-96 355.1 247 76.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.7e-95 353.2 256 73.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-94 350.5 257 70.0
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-94 350.5 257 70.0
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.1e-94 348.6 268 69.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.3e-94 348.2 265 69.8
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.2e-93 347.1 261 70.5
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.0e-92 344.0 260 69.6
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-91 340.5 261 70.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.2e-90 337.0 261 67.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.1e-90 336.3 261 68.2
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.7e-90 335.9 259 67.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.6e-90 335.5 225 78.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 4.7e-90 335.1 262 68.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 4.7e-90 335.1 257 69.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.1e-90 334.7 256 69.5
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.4e-89 333.6 261 67.8
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.4e-89 333.6 262 67.9
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.4e-89 333.6 261 67.8
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.4e-89 333.6 261 67.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.3e-89 332.8 259 67.6
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 3.9e-89 332.0 261 67.4
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 5.1e-89 331.6 268 68.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.7e-89 331.3 263 67.3
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 8.8e-89 330.9 261 67.0
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 7.4e-88 327.8 235 72.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 4.8e-87 325.1 257 68.5
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.1e-86 322.4 280 63.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.1e-86 322.0 254 67.3
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.2e-84 316.2 264 65.2
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 6.5e-84 314.7 260 64.2
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 8.5e-84 314.3 253 66.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.5e-83 311.6 263 64.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-82 310.5 260 64.2
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.6e-82 310.1 206 81.1
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.7e-82 308.5 189 82.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.1e-80 303.9 199 80.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-79 300.4 263 62.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.1e-78 295.4 260 62.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 7.7e-77 291.2 252 61.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.5e-75 287.0 238 66.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-70 270.8 191 76.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-68 264.2 144 91.0
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-60 237.7 174 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.6e-42 176.0 215 51.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 4.9e-39 165.6 172 54.7
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.5e-37 159.5 191 48.2
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-36 157.5 241 41.1
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.2e-32 144.4 121 66.1
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.2e-30 136.3 94 70.2
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.2e-30 134.8 93 73.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.8e-29 131.7 74 90.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.9e-25 118.6 76 77.6
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-24 117.1 228 36.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 4.3e-19 99.4 179 39.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-15 87.4 134 44.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 4.2e-14 82.8 185 32.4
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 8.7e-12 75.1 70 58.6
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.8e-10 70.1 41 78.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.1e-10 68.6 40 82.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-09 68.2 41 75.6
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.0e-08 63.9 43 67.4
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.9e-07 60.1 142 33.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 6.4e-07 58.9 86 33.7


User provided reference genes

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